RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 SPAG17Q6Q759 2223 aa20.35■□□□□ 0.85
CDX1-202ENST00000616154 ANAPC1Q9H1A4 1944 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 FAM237AA0A1B0GTK4 181 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 EXTL3O43909 919 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 HUS1O60921 280 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 LRP3O75074 770 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 PRPF40AO75400 957 aaKnown RBP20.34■□□□□ 0.85
CDX1-202ENST00000616154 RETP07949 1114 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 CSH1P0DML2 217 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 CSH2P0DML3 217 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 CMA1P23946 247 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 HOXA6P31267 233 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 HOXD13P35453 343 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 GPR15P49685 360 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 ATXN1P54253 815 aaKnown RBP20.34■□□□□ 0.85
CDX1-202ENST00000616154 ASIC1P78348 528 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 KRT85P78386 507 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 MYL7Q01449 175 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 BFSP1Q12934 665 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 SIM2Q14190 667 aaPredicted RBP20.34■□□□□ 0.85
CDX1-202ENST00000616154 INTS6LQ5JSJ4 861 aaKnown RBP20.34■□□□□ 0.85
CDX1-202ENST00000616154 MAB21L3Q8N8X9 362 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 GLIS3Q8NEA6 775 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 USP13Q92995 863 aaPredicted RBP20.34■□□□□ 0.85
CDX1-202ENST00000616154 PKMYT1Q99640 499 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 CBWD1Q9BRT8 395 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 GKN1Q9NS71 199 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 C2orf42Q9NWW7 574 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 GDAP2Q9NXN4 497 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 DDX43Q9NXZ2 648 aaKnown RBP20.34■□□□□ 0.85
CDX1-202ENST00000616154 CDV3Q9UKY7 258 aaKnown RBP20.34■□□□□ 0.85
CDX1-202ENST00000616154 HPSEQ9Y251 543 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 CCL26Q9Y258 94 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 GREB1Q4ZG55 1949 aa20.34■□□□□ 0.85
CDX1-202ENST00000616154 UBE4BO95155 1302 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 PVALEFA0A1B0GWK0 134 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 HRO43593 1189 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 ACTN4O43707 911 aaKnown RBP20.33■□□□□ 0.85
CDX1-202ENST00000616154 PRPF6O94906 941 aaKnown RBP20.33■□□□□ 0.85
CDX1-202ENST00000616154 SLFN14P0C7P3 912 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 RPL10AP62906 217 aaKnown RBP20.33■□□□□ 0.85
CDX1-202ENST00000616154 SPEM2Q0P670 501 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 FAM26FQ5R3K3 315 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 TXNDC8Q6A555 127 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 MON1AQ86VX9 555 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 TOP6BLQ8N6T0 577 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 ZNF507Q8TCN5 953 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 MRPS31Q92665 395 aaKnown RBP20.33■□□□□ 0.85
CDX1-202ENST00000616154 HPS4Q9NQG7 708 aa20.33■□□□□ 0.85
CDX1-202ENST00000616154 ATG2BQ96BY7 2078 aa20.33■□□□□ 0.84
CDX1-202ENST00000616154 GOLGA8IPA6NC78 632 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 GOLGA8JA6NMD2 632 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 NOL4O94818 638 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 ACAT1P24752 427 aaKnown RBP20.32■□□□□ 0.84
CDX1-202ENST00000616154 RBP5P82980 135 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 RUNX3Q13761 415 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 ZNF268Q14587 947 aaPredicted RBP20.32■□□□□ 0.84
CDX1-202ENST00000616154 SCARA3Q6AZY7 606 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 OSTM1Q86WC4 334 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 CSGALNACT2Q8N6G5 542 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 STKLD1Q8NE28 680 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 HPS3Q969F9 1004 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 TRMT2BQ96GJ1 504 aaKnown RBP20.32■□□□□ 0.84
CDX1-202ENST00000616154 FAM84AQ96KN4 292 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 SPATA32Q96LK8 384 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 RTKNQ9BST9 563 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 MTMR12Q9C0I1 747 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 PDE11AQ9HCR9 933 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 TDP1Q9NUW8 608 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 UXTQ9UBK9 157 aaPredicted RBP20.32■□□□□ 0.84
CDX1-202ENST00000616154 USP25Q9UHP3 1055 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 SIX4Q9UIU6 781 aa20.32■□□□□ 0.84
CDX1-202ENST00000616154 MAGED2Q9UNF1 606 aaPredicted RBP20.32■□□□□ 0.84
CDX1-202ENST00000616154 TULP1O00294 542 aaPredicted RBP20.31■□□□□ 0.84
CDX1-202ENST00000616154 KRT19P08727 400 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 CYP2F1P24903 491 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 SNRPFP62306 86 aaKnown RBP20.31■□□□□ 0.84
CDX1-202ENST00000616154 SRSF5Q13243 272 aaKnown RBP20.31■□□□□ 0.84
CDX1-202ENST00000616154 DDR2Q16832 855 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 BMT2Q1RMZ1 405 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 CFAP221Q4G0U5 840 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 TMEM196Q5HYL7 178 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 SDHAF4Q5VUM1 108 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 HEATR6Q6AI08 1181 aaKnown RBP20.31■□□□□ 0.84
CDX1-202ENST00000616154 WDR5BQ86VZ2 330 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 ADGRF2Q8IZF7 708 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 GPD1LQ8N335 351 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 CHFRQ96EP1 664 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 MYRFLQ96LU7 910 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 SCAND2PQ9GZW5 306 aaPredicted RBP20.31■□□□□ 0.84
CDX1-202ENST00000616154 EBF3Q9H4W6 596 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 PCIF1Q9H4Z3 704 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 GTF3C4Q9UKN8 822 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 SNX9Q9Y5X1 595 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 PTPRDP23468 1912 aa20.31■□□□□ 0.84
CDX1-202ENST00000616154 HELZP42694 1942 aaKnown RBP20.31■□□□□ 0.84
CDX1-202ENST00000616154 OTOL1A6NHN0 477 aaPredicted RBP20.3■□□□□ 0.84
CDX1-202ENST00000616154 TRDMT1O14717 391 aaKnown RBP20.3■□□□□ 0.84
CDX1-202ENST00000616154 GABRDO14764 452 aa20.3■□□□□ 0.84
CDX1-202ENST00000616154 TADA3O75528 432 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms