RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PPP1R26Q5T8A7 1209 aaPredicted RBP15.23■□□□□ 0.03
UPF1-211ENST00000600868 LCLAT1Q6UWP7 414 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 PAQR9Q6ZVX9 377 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 FUKQ8N0W3 1084 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 ZNF461Q8TAF7 563 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 SLC2A14Q8TDB8 520 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 SLC20A1Q8WUM9 679 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 MYLPFQ96A32 169 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 FUBP3Q96I24 572 aaKnown RBP eCLIP15.23■□□□□ 0.03
UPF1-211ENST00000600868 KLHL5Q96PQ7 755 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 ABCB6Q9NP58 842 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 ARHGAP20Q9P2F6 1191 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 PCDHGC3Q9UN70 934 aa15.23■□□□□ 0.03
UPF1-211ENST00000600868 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.23■□□□□ 0.03
UPF1-211ENST00000600868 TRIOBPQ9H2D6 2365 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 ATP8B3O60423 1300 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 WDR27A2RRH5 827 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 MMEP08473 750 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 CHRNB2P17787 502 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 ANXA13P27216 316 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 CA8P35219 290 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 ARPP19P56211 112 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 CFAP221Q4G0U5 840 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 TDRD12Q587J7 1177 aaKnown RBP15.22■□□□□ 0.03
UPF1-211ENST00000600868 ZNF571Q7Z3V5 609 aaPredicted RBP15.22■□□□□ 0.03
UPF1-211ENST00000600868 TMTC1Q8IUR5 882 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 SPATA2LQ8IUW3 424 aaPredicted RBP15.22■□□□□ 0.03
UPF1-211ENST00000600868 ANKRD52Q8NB46 1076 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 SPPL2BQ8TCT7 592 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 MRPL38Q96DV4 380 aaKnown RBP15.22■□□□□ 0.03
UPF1-211ENST00000600868 AGPAT1Q99943 283 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 LHX5Q9H2C1 402 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 TTYH1Q9H313 450 aaPredicted RBP15.22■□□□□ 0.03
UPF1-211ENST00000600868 HSFX1Q9UBD0 423 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 AFF4Q9UHB7 1163 aaKnown RBP15.22■□□□□ 0.03
UPF1-211ENST00000600868 TSPAN16Q9UKR8 245 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 PCDHB5Q9Y5E4 795 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 PCDHGC5Q9Y5F6 944 aa15.22■□□□□ 0.03
UPF1-211ENST00000600868 COL4A4P53420 1690 aaPredicted RBP15.22■□□□□ 0.03
UPF1-211ENST00000600868 MTMR11A4FU01 709 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 RFXAPO00287 272 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 SOX1O00570 391 aaPredicted RBP15.21■□□□□ 0.03
UPF1-211ENST00000600868 MICAL2O94851 1124 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 VNN2O95498 520 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 PLEKP08567 350 aaPredicted RBP15.21■□□□□ 0.03
UPF1-211ENST00000600868 ATF2P15336 505 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 ADORA2BP29275 332 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 FMO1Q01740 532 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 CYP27A1Q02318 531 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 GOLGA7BQ2TAP0 167 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 PKDCCQ504Y2 493 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 TAF3Q5VWG9 929 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 LILRA6Q6PI73 481 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 CYP26C1Q6V0L0 522 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 TRIM72Q6ZMU5 477 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 RNF19BQ6ZMZ0 732 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 FAM35AQ86V20 835 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 VPS36Q86VN1 386 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 LRRC8AQ8IWT6 810 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 OLIG1Q8TAK6 271 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 SMARCD1Q96GM5 515 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 CHP1Q99653 195 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 BAG1Q99933 345 aaPredicted RBP15.21■□□□□ 0.03
UPF1-211ENST00000600868 MED10Q9BTT4 135 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 DUSP16Q9BY84 665 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 ZNF518BQ9C0D4 1074 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 LMCD1Q9NZU5 365 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 HESX1Q9UBX0 185 aa15.21■□□□□ 0.03
UPF1-211ENST00000600868 PTPRDP23468 1912 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 LAMA3Q16787 3333 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 M0QYV0 167 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 CLDN5O00501 218 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 CSPG5O95196 566 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 PTMAP06454 111 aaKnown RBP15.2■□□□□ 0.02
UPF1-211ENST00000600868 CFHP08603 1231 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 FAM200BP0CF97 657 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 TNFAIP3P21580 790 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 BDNFP23560 247 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 KLRC2P26717 231 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 CDH5P33151 784 aaPredicted RBP15.2■□□□□ 0.02
UPF1-211ENST00000600868 EIF4A3P38919 411 aaKnown RBP15.2■□□□□ 0.02
UPF1-211ENST00000600868 MAGEA11P43364 429 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 BCAT1P54687 386 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 ASTE1Q2TB18 679 aaPredicted RBP15.2■□□□□ 0.02
UPF1-211ENST00000600868 ZNF697Q5TEC3 545 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 VSTM1Q6UX27 236 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 TTC30AQ86WT1 665 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 TMEM139Q8IV31 216 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 GLYCTKQ8IVS8 523 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 ATAD1Q8NBU5 361 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 CCDC112Q8NEF3 446 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 PGLYRP2Q96PD5 576 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 PDCL3Q9H2J4 239 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 NHEJ1Q9H9Q4 299 aaPredicted RBP15.2■□□□□ 0.02
UPF1-211ENST00000600868 CSNK1G1Q9HCP0 422 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 ABI2Q9NYB9 513 aaPredicted RBP15.2■□□□□ 0.02
UPF1-211ENST00000600868 TRANK1O15050 2925 aa15.2■□□□□ 0.02
UPF1-211ENST00000600868 DDX3XO00571 662 aaKnown RBP eCLIP15.19■□□□□ 0.02
UPF1-211ENST00000600868 TGM5O43548 720 aa15.19■□□□□ 0.02
UPF1-211ENST00000600868 CLASP2O75122 1294 aaKnown RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms