RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 CRISPLD1Q9H336 500 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 SLC2A4RGQ9NR83 387 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 SLC38A7Q9NVC3 462 aa9.4□□□□□ -0.9
TRIM28-214ENST00000600840 ARMCX3Q9UH62 379 aaPredicted RBP9.4□□□□□ -0.9
TRIM28-214ENST00000600840 CFAP47Q6ZTR5 3102 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.39□□□□□ -0.91
TRIM28-214ENST00000600840 KCNJ18B7U540 433 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 SYN3O14994 580 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 TRAPPC3O43617 180 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 LILRB5O75023 590 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 XYLBO75191 536 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 FGFR1OPO95684 399 aaKnown RBP9.39□□□□□ -0.91
TRIM28-214ENST00000600840 POU2F2P09086 479 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 EPB41P11171 864 aaKnown RBP9.39□□□□□ -0.91
TRIM28-214ENST00000600840 ATF2P15336 505 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 GJA1P17302 382 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 CD72P21854 359 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 EEF1GP26641 437 aaKnown RBP9.39□□□□□ -0.91
TRIM28-214ENST00000600840 GTF2H1P32780 548 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 RPL9P32969 192 aaKnown RBP9.39□□□□□ -0.91
TRIM28-214ENST00000600840 STARD6P59095 220 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 PPP2R3AQ06190 1150 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 KCNH2Q12809 1159 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 KCNJ12Q14500 433 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 KRT31Q15323 416 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 DUOXA2Q1HG44 320 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 ZNF528Q3MIS6 628 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 HSP90AA4PQ58FG1 418 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 TDRD10Q5VZ19 366 aaKnown RBP9.39□□□□□ -0.91
TRIM28-214ENST00000600840 LMBRD2Q68DH5 695 aaPredicted RBP9.39□□□□□ -0.91
TRIM28-214ENST00000600840 TANGO2Q6ICL3 276 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 ZBTB44Q8NCP5 570 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 ATRIPQ8WXE1 791 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 SEMA4DQ92854 862 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 SECISBP2LQ93073 1101 aaKnown RBP9.39□□□□□ -0.91
TRIM28-214ENST00000600840 CCDC127Q96BQ5 260 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 KIF12Q96FN5 646 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 ZSWIM3Q96MP5 696 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 TMEM209Q96SK2 561 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 CORO1BQ9BR76 489 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 TUBGCP2Q9BSJ2 902 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 XYLT2Q9H1B5 865 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 GRPEL1Q9HAV7 217 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 CYP4F11Q9HBI6 524 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 CEP72Q9P209 647 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 FBXO4Q9UKT5 387 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 UBQLN1Q9UMX0 589 aaKnown RBP9.39□□□□□ -0.91
TRIM28-214ENST00000600840 NUB1Q9Y5A7 615 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 PCDHGA2Q9Y5H1 932 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 INSL5Q9Y5Q6 135 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 TSC2P49815 1807 aa9.39□□□□□ -0.91
TRIM28-214ENST00000600840 KANSL1LA0AUZ9 987 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 M0QZQ0 153 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 SLC30A4O14863 429 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 STAU1O95793 577 aaKnown RBP9.38□□□□□ -0.91
TRIM28-214ENST00000600840 KRT13P13646 458 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 PTPN2P17706 415 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 FCARP24071 287 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 GCLMP48507 274 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 FMO5P49326 533 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 AARSP49588 968 aaKnown RBP eCLIP9.38□□□□□ -0.91
TRIM28-214ENST00000600840 AP3M2P53677 418 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 ADCY1Q08828 1119 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 KCNMA1Q12791 1236 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 TMEM132DQ14C87 1099 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 UBXN2BQ14CS0 331 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 ACAP1Q15027 740 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 SLC44A4Q53GD3 710 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 C9orf57Q5W0N0 161 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 TCEAL8Q8IYN2 117 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 TTC9BQ8N6N2 239 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 TAS1R2Q8TE23 839 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 FAM212AQ96EL1 285 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 NAP1L5Q96NT1 182 aaPredicted RBP9.38□□□□□ -0.91
TRIM28-214ENST00000600840 PGLYRP2Q96PD5 576 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 BCO2Q9BYV7 579 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 MTMR12Q9C0I1 747 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 NDST4Q9H3R1 872 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 VRTNQ9H8Y1 702 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 TMEM8AQ9HCN3 771 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 ZSCAN32Q9NX65 697 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 DPP3Q9NY33 737 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 PCDHB8Q9UN66 801 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 MRPS23Q9Y3D9 190 aaKnown RBP9.38□□□□□ -0.91
TRIM28-214ENST00000600840 ZFP37Q9Y6Q3 630 aaPredicted RBP9.38□□□□□ -0.91
TRIM28-214ENST00000600840 COL4A2P08572 1712 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 RALGAPA1Q6GYQ0 2036 aa9.38□□□□□ -0.91
TRIM28-214ENST00000600840 TICRRQ7Z2Z1 1910 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 H7C4K7 107 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 PRRG1O14668 218 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 P4HA2O15460 535 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 GDF9O60383 454 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 SOAT2O75908 522 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 LRG1P02750 347 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 DLATP10515 647 aaKnown RBP9.37□□□□□ -0.91
TRIM28-214ENST00000600840 TNNI1P19237 187 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 ELF1P32519 619 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 PBX1P40424 430 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 COPB1P53618 953 aaKnown RBP9.37□□□□□ -0.91
TRIM28-214ENST00000600840 TFAMQ00059 246 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms