RNA–Protein interactions for RNA: ENST00000586385.5

BRCA1-225, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 781 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-225ENST00000586385 FAM160A1Q05DH4 1040 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 DMC1Q14565 340 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 TAF12Q16514 161 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 EML3Q32P44 896 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 SV2CQ496J9 727 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 C8orf34Q49A92 452 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 INTS6LQ5JSJ4 861 aaKnown RBP12.79□□□□□ -0.36
BRCA1-225ENST00000586385 SLFN12LQ6IEE8 588 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 OSCP1Q8WVF1 389 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 LARP4BQ92615 738 aaKnown RBP12.79□□□□□ -0.36
BRCA1-225ENST00000586385 MRPS31Q92665 395 aaKnown RBP12.79□□□□□ -0.36
BRCA1-225ENST00000586385 CALML4Q96GE6 196 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 TRMT2BQ96GJ1 504 aaKnown RBP12.79□□□□□ -0.36
BRCA1-225ENST00000586385 TMX3Q96JJ7 454 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 FGFBP2Q9BYJ0 223 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 LINC00597Q9H2U6 94 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 ABCB6Q9NP58 842 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 EBF1Q9UH73 591 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 SIX4Q9UIU6 781 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 GTF3C4Q9UKN8 822 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 ATG2BQ96BY7 2078 aa12.79□□□□□ -0.36
BRCA1-225ENST00000586385 TBCAO75347 108 aaKnown RBP12.78□□□□□ -0.36
BRCA1-225ENST00000586385 HNRNPLP14866 589 aaKnown RBP eCLIP12.78□□□□□ -0.36
BRCA1-225ENST00000586385 OPRD1P41143 372 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 CASP5P51878 434 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 TSPY1Q01534 308 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 MESP2Q0VG99 397 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 NFE2Q16621 373 aaPredicted RBP12.78□□□□□ -0.36
BRCA1-225ENST00000586385 FBXO43Q4G163 708 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 RNF43Q68DV7 783 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 PSAPL1Q6NUJ1 521 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 BRSK2Q8IWQ3 736 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 ARL14EPQ8N8R7 260 aaPredicted RBP12.78□□□□□ -0.36
BRCA1-225ENST00000586385 CD101Q93033 1021 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 SAAL1Q96ER3 474 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 ACBD6Q9BR61 282 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 FAM213AQ9BRX8 229 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 EDEM2Q9BV94 578 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 TMEM121BQ9BXQ6 578 aaPredicted RBP12.78□□□□□ -0.36
BRCA1-225ENST00000586385 TMEM206Q9H813 350 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 DUS2Q9NX74 493 aaKnown RBP12.78□□□□□ -0.36
BRCA1-225ENST00000586385 DDX43Q9NXZ2 648 aaKnown RBP12.78□□□□□ -0.36
BRCA1-225ENST00000586385 AGAP1Q9UPQ3 857 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 INVSQ9Y283 1065 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 OBSL1O75147 1896 aa12.78□□□□□ -0.36
BRCA1-225ENST00000586385 CACNA1GO43497 2377 aa12.77□□□□□ -0.36
BRCA1-225ENST00000586385 LNP1A1A4G5 178 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 C4orf47A7E2U8 309 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 C1QTNF9BB2RNN3 333 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 K7EQS6 105 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 GABRDO14764 452 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 EIF5BO60841 1220 aaKnown RBP12.77□□□□□ -0.37
BRCA1-225ENST00000586385 ATP2C2O75185 946 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 IL18RAPO95256 599 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 APBB3O95704 486 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 TOP3BO95985 862 aaKnown RBP12.77□□□□□ -0.37
BRCA1-225ENST00000586385 ITGB3P05106 788 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 KRT18P05783 430 aaKnown RBP12.77□□□□□ -0.37
BRCA1-225ENST00000586385 C1QTNF9P0C862 333 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 BCKDHBP21953 392 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 DDIT3P35638 169 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 LONP1P36776 959 aaKnown RBP12.77□□□□□ -0.37
BRCA1-225ENST00000586385 TFAMQ00059 246 aaKnown RBP12.77□□□□□ -0.37
BRCA1-225ENST00000586385 CREB5Q02930 508 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 SOWAHAQ2M3V2 549 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 PMS2CLQ68D20 193 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 CC2D1AQ6P1N0 951 aaPredicted RBP12.77□□□□□ -0.37
BRCA1-225ENST00000586385 DYMQ7RTS9 669 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 LIMS2Q7Z4I7 341 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 NT5DC4Q86YG4 428 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 SFTPA1Q8IWL2 248 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 CPA6Q8N4T0 437 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 SH3RF2Q8TEC5 729 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 USP33Q8TEY7 942 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 POMGNT1Q8WZA1 660 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 DNAJC19Q96DA6 116 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 EPSTI1Q96J88 318 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 ZNF560Q96MR9 790 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 TRPC7Q9HCX4 862 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 GDAP2Q9NXN4 497 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 DENND4CQ5VZ89 1909 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 LAMA1P25391 3075 aa12.77□□□□□ -0.37
BRCA1-225ENST00000586385 MYMKA6NI61 221 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 PATE3B3GLJ2 98 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 CDX4O14627 284 aaPredicted RBP12.76□□□□□ -0.37
BRCA1-225ENST00000586385 CAVIN2O95810 425 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 PROS1P07225 676 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 USP17L7P0C7H9 530 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 TCF3P15923 654 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 SPINK2P20155 84 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 PNPLA4P41247 253 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 NOVA1P51513 510 aaKnown RBP12.76□□□□□ -0.37
BRCA1-225ENST00000586385 USP46P62068 366 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 RPL10AP62906 217 aaKnown RBP12.76□□□□□ -0.37
BRCA1-225ENST00000586385 SF3A1Q15459 793 aaKnown RBP12.76□□□□□ -0.37
BRCA1-225ENST00000586385 ELF2Q15723 593 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 CFAP221Q4G0U5 840 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 FAM171BQ6P995 826 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 RASSF3Q86WH2 238 aa12.76□□□□□ -0.37
BRCA1-225ENST00000586385 LRRC52Q8N7C0 313 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms