RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 OTUD6AQ7L8S5 288 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 CCDC186Q7Z3E2 898 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 TMC6Q7Z403 805 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 FILIP1Q7Z7B0 1213 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 CREBRFQ8IUR6 639 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 CCDC60Q8IWA6 550 aaPredicted RBP11.12□□□□□ -0.63
SS18-221ENST00000582448 CCDC150Q8NCX0 1101 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 PIGOQ8TEQ8 1089 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 NKD2Q969F2 451 aaPredicted RBP11.12□□□□□ -0.63
SS18-221ENST00000582448 DNAJC19Q96DA6 116 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 ASB16Q96NS5 453 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 ADAM7Q9H2U9 754 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 ELAC1Q9H777 363 aaKnown RBP11.12□□□□□ -0.63
SS18-221ENST00000582448 ODF2LQ9ULJ1 636 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 AKT3Q9Y243 479 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 HIF3AQ9Y2N7 669 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 PCDHA10Q9Y5I2 948 aa11.12□□□□□ -0.63
SS18-221ENST00000582448 PTPRZ1P23471 2315 aaPredicted RBP11.11□□□□□ -0.63
SS18-221ENST00000582448 C2orf71A6NGG8 1288 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 KCNJ18B7U540 433 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 PROB1E7EW31 1015 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 HYAL3O43820 417 aaPredicted RBP11.11□□□□□ -0.63
SS18-221ENST00000582448 GPR32O75388 356 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 LYPLA2O95372 231 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 FGFR4P22455 802 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 MTHFRP42898 656 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 ID4P47928 161 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 CLCN3P51790 818 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 NLRP11P59045 1033 aaKnown RBP11.11□□□□□ -0.63
SS18-221ENST00000582448 ITIH3Q06033 890 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 RAD51AP2Q09MP3 1159 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 LRP8Q14114 963 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 GIT2Q14161 759 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 KCNJ12Q14500 433 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 BMS1Q14692 1282 aaKnown RBP11.11□□□□□ -0.63
SS18-221ENST00000582448 RPS26P11Q5JNZ5 115 aaPredicted RBP11.11□□□□□ -0.63
SS18-221ENST00000582448 ATAT1Q5SQI0 421 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 RNF43Q68DV7 783 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 FOXR2Q6PJQ5 311 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 B3GNT9Q6UX72 402 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 ECHDC2Q86YB7 292 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 LRRC43Q8N309 656 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 MRPL43Q8N983 215 aaKnown RBP11.11□□□□□ -0.63
SS18-221ENST00000582448 TDRD5Q8NAT2 981 aaKnown RBP11.11□□□□□ -0.63
SS18-221ENST00000582448 C2CD4AQ8NCU7 369 aaPredicted RBP11.11□□□□□ -0.63
SS18-221ENST00000582448 AUTS2Q8WXX7 1259 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 SCLT1Q96NL6 688 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 NECTIN4Q96NY8 510 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 REEP2Q9BRK0 252 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 TIPINQ9BVW5 301 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 ZFP64Q9NPA5 681 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 RNF19AQ9NV58 838 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 SEL1LQ9UBV2 794 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 LIMA1Q9UHB6 759 aaKnown RBP11.11□□□□□ -0.63
SS18-221ENST00000582448 LOXHD1Q8IVV2 1947 aa11.11□□□□□ -0.63
SS18-221ENST00000582448 KMT2EQ8IZD2 1858 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 IGKV6D-21A0A0A0MT36 114 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 N4BP3O15049 544 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 EIF4EBP3O60516 100 aaPredicted RBP11.1□□□□□ -0.63
SS18-221ENST00000582448 SFPQP23246 707 aaKnown RBP eCLIP11.1□□□□□ -0.63
SS18-221ENST00000582448 MAP4P27816 1152 aaKnown RBP11.1□□□□□ -0.63
SS18-221ENST00000582448 PPM1AP35813 382 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 NBL1P41271 181 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 MAPK8P45983 427 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 ALDH7A1P49419 539 aaKnown RBP11.1□□□□□ -0.63
SS18-221ENST00000582448 SOX4Q06945 474 aaPredicted RBP11.1□□□□□ -0.63
SS18-221ENST00000582448 TCP11X2Q5H9J9 407 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 SPECC1LQ69YQ0 1117 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 RINT1Q6NUQ1 792 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 CDPF1Q6NVV7 123 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 EFCAB12Q6NXP0 572 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 NXPE4Q6UWF7 544 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 PPFIBP1Q86W92 1011 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 ZDHHC13Q8IUH4 622 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 VSTM4Q8IW00 320 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 C4orf19Q8IY42 314 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 SLC39A11Q8N1S5 342 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 LRRC71Q8N4P6 559 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 MYCT1Q8N699 235 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 KIAA0895Q8NCT3 520 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 SRRTQ9BXP5 876 aaKnown RBP11.1□□□□□ -0.63
SS18-221ENST00000582448 HSD3B7Q9H2F3 369 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 MRPL44Q9H9J2 332 aaKnown RBP11.1□□□□□ -0.63
SS18-221ENST00000582448 PARVGQ9HBI0 331 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 ANKEF1Q9NU02 776 aa11.1□□□□□ -0.63
SS18-221ENST00000582448 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.1□□□□□ -0.634e-6■■■□□ 17.6
SS18-221ENST00000582448 COL1A2P08123 1366 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 NPHP3-ACAD11A0A0J9YXS1 232 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.09□□□□□ -0.63
SS18-221ENST00000582448 FRMD3A2A2Y4 597 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 PES1O00541 588 aaKnown RBP11.09□□□□□ -0.63
SS18-221ENST00000582448 GSC2O15499 205 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 PI15O43692 258 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 C22orf31O95567 290 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 GNA14O95837 355 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 ADH5P11766 374 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 EPCAMP16422 314 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 GUCY2CP25092 1073 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 TMOD1P28289 359 aa11.09□□□□□ -0.63
SS18-221ENST00000582448 YWHABP31946 246 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms