RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ERBB2P04626 1255 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 PFKMP08237 780 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 CCDC130P13994 396 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 ACAT1P24752 427 aaKnown RBP11.12□□□□□ -0.63
SS18-217ENST00000580958 CTNNA2P26232 953 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 ADORA2BP29275 332 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 MARCKSL1P49006 195 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 PSMC1P62191 440 aaKnown RBP11.12□□□□□ -0.63
SS18-217ENST00000580958 TLE2Q04725 743 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 PDCLQ13371 301 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 TUSC3Q13454 348 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 DCAF12L1Q5VU92 463 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 GLB1LQ6UWU2 654 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 ANKRD33Q7Z3H0 272 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 TTC30AQ86WT1 665 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 XYLT1Q86Y38 959 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 CRYBG2Q8N1P7 616 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 UBL4BQ8N7F7 174 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 DBF4BQ8NFT6 615 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 ANKRD7Q92527 254 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 CD101Q93033 1021 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 C18orf8Q96DM3 657 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 DDX27Q96GQ7 796 aaKnown RBP11.12□□□□□ -0.63
SS18-217ENST00000580958 SCLYQ96I15 445 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 KRTAP3-3Q9BYR6 98 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 KRTAP3-2Q9BYR7 98 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 PPP1R12CQ9BZL4 782 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 DNAI2Q9GZS0 605 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 WNT8AQ9H1J5 351 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 SYNCQ9H7C4 482 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 RNF14Q9UBS8 474 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 STRIP2Q9ULQ0 834 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 LTBP2Q14767 1821 aa11.12□□□□□ -0.63
SS18-217ENST00000580958 TMEM191CA6NGB0 347 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 DCDC2CA8MYV0 355 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 I3L4J1 428 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 PIK3R2O00459 728 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 B4GALT3O60512 393 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 FAM163BP0C2L3 166 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 RHOXF2BP0C7M4 288 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 SETSIPP0DME0 302 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 COL6A1P12109 1028 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 CYP2C18P33260 490 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 CTNNA1P35221 906 aaKnown RBP11.11□□□□□ -0.63
SS18-217ENST00000580958 BRCC3P46736 316 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 GABRB2P47870 512 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 RGS7P49802 495 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 CCL23P55773 120 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 RPL7AP62424 266 aaKnown RBP11.11□□□□□ -0.63
SS18-217ENST00000580958 FAAP100Q0VG06 881 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 ZNF211Q13398 564 aaPredicted RBP11.11□□□□□ -0.63
SS18-217ENST00000580958 PAN2Q504Q3 1202 aaKnown RBP11.11□□□□□ -0.63
SS18-217ENST00000580958 PKDCCQ504Y2 493 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 TIGD5Q53EQ6 642 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 NOMO2Q5JPE7 1267 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 PPP1R15BQ5SWA1 713 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 DCUN1D2Q6PH85 259 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 CD300LGQ6UXG3 332 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 TMEM86AQ8N2M4 240 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 RASGEF1CQ8N431 466 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 C3orf20Q8ND61 904 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 SPATA4Q8NEY3 305 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 URGCPQ8TCY9 931 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 ACTRT1Q8TDG2 376 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 IPO4Q8TEX9 1081 aaKnown RBP11.11□□□□□ -0.63
SS18-217ENST00000580958 ALG3Q92685 438 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 ARMC5Q96C12 935 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 UROC1Q96N76 676 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 MCEEQ96PE7 176 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 RHOXF2Q9BQY4 288 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 HIPK3Q9H422 1215 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 METTL5Q9NRN9 209 aaKnown RBP11.11□□□□□ -0.63
SS18-217ENST00000580958 WDR35Q9P2L0 1181 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 HESX1Q9UBX0 185 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 IP6K2Q9UHH9 426 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 USTQ9Y2C2 406 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 ATP11BQ9Y2G3 1177 aa11.11□□□□□ -0.63
SS18-217ENST00000580958 TIMM13Q9Y5L4 95 aaPredicted RBP11.11□□□□□ -0.63
SS18-217ENST00000580958 ALPK3Q96L96 1907 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 PGRMC1O00264 195 aaKnown RBP11.1□□□□□ -0.63
SS18-217ENST00000580958 TULP2O00295 520 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 GABRDO14764 452 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 ATP2C2O75185 946 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 ODC1P11926 461 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 PTPN1P18031 435 aaKnown RBP11.1□□□□□ -0.63
SS18-217ENST00000580958 MAN1A1P33908 653 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 SLC1A1P43005 524 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 AARSP49588 968 aaKnown RBP eCLIP11.1□□□□□ -0.63
SS18-217ENST00000580958 GATMP50440 423 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 PEX5P50542 639 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 LBX1P52954 281 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 GSCP56915 257 aaPredicted RBP11.1□□□□□ -0.63
SS18-217ENST00000580958 TUBB4BP68371 445 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 OGDHQ02218 1023 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 TAP1Q03518 808 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 ITIH3Q06033 890 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 PDE4CQ08493 712 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 ZNF252P-AS1Q0IIN9 211 aa11.1□□□□□ -0.63
SS18-217ENST00000580958 ZNF268Q14587 947 aaPredicted RBP11.1□□□□□ -0.63
SS18-217ENST00000580958 CCDC142Q17RM4 750 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms