RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 ZNF334Q9HCZ1 680 aaPredicted RBP20.61■□□□□ 0.89
SS18-208ENST00000577751 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.61■□□□□ 0.896e-16■■■■■ 187.5
SS18-208ENST00000577751 MBD3O95983 291 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 HMGA1P17096 107 aaKnown RBP20.6■□□□□ 0.89
SS18-208ENST00000577751 FMO5P49326 533 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 INCA1Q0VD86 236 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 MTMR3Q13615 1198 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 HTR4Q13639 388 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 DDR2Q16832 855 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 MDH1BQ5I0G3 518 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 VSTM1Q6UX27 236 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 CRYBG2Q8N1P7 616 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 GIPC2Q8TF65 315 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 RSAD2Q8WXG1 361 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 MCRS1Q96EZ8 462 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 TNIP3Q96KP6 325 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 C1QTNF1Q9BXJ1 281 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 IL21Q9HBE4 155 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 C11orf16Q9NQ32 467 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 GREB1Q4ZG55 1949 aa20.6■□□□□ 0.89
SS18-208ENST00000577751 DENND4CQ5VZ89 1909 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 GPR37L1O60883 481 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 GJA1P17302 382 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 BDNFP23560 247 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 ERCC5P28715 1186 aaPredicted RBP20.59■□□□□ 0.89
SS18-208ENST00000577751 NDST1P52848 882 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 CYP27A1Q02318 531 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 TDGQ13569 410 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 CT47A1Q5JQC4 288 aaPredicted RBP20.59■□□□□ 0.89
SS18-208ENST00000577751 GAREM2Q75VX8 874 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 UBALD2Q8IYN6 164 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 SLC44A3Q8N4M1 653 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 SHKBP1Q8TBC3 707 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 FAM200AQ8TCP9 573 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 GPR152Q8TDT2 470 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 FGF14Q92915 247 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 CEP295NLQ96MC4 621 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 B3GNT5Q9BYG0 378 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 HMGXB4Q9UGU5 601 aa20.59■□□□□ 0.89
SS18-208ENST00000577751 A0A1W2PRU2 124 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 P4HA2O15460 535 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 FGF19O95750 216 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 CSH1P0DML2 217 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 CSH2P0DML3 217 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 CCDC192P0DO97 292 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 SDHAF4Q5VUM1 108 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 PARM1Q6UWI2 310 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 IRF2BP1Q8IU81 584 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 TATDN2Q93075 761 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 SPATA17Q96L03 361 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 MYRFLQ96LU7 910 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 GPR88Q9GZN0 384 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 SMOC2Q9H3U7 446 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 FAM124BQ9H5Z6 455 aaPredicted RBP20.58■□□□□ 0.89
SS18-208ENST00000577751 DACH1Q9UI36 760 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 NUMBLQ9Y6R0 609 aa20.58■□□□□ 0.89
SS18-208ENST00000577751 OBSL1O75147 1896 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 CILPO75339 1184 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 TECTAO75443 2155 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 NOL4O94818 638 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 GABRR2P28476 465 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 SIGLEC14Q08ET2 396 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 KCNH2Q12809 1159 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 TEAD2Q15562 447 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 WDR44Q5JSH3 913 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 TRIM67Q6ZTA4 783 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 PAQR9Q6ZVX9 377 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 MTSS1LQ765P7 747 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 ACOT1Q86TX2 421 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 SCN4BQ8IWT1 228 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 LMO3Q8TAP4 145 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 WHAMMQ8TF30 809 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 C8orf48Q96LL4 319 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 ZSWIM3Q96MP5 696 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 TWNKQ96RR1 684 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 RPP25Q9BUL9 199 aaKnown RBP20.57■□□□□ 0.88
SS18-208ENST00000577751 ELOVL4Q9GZR5 314 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 DUSP12Q9UNI6 340 aa20.57■□□□□ 0.88
SS18-208ENST00000577751 SLC38A8A6NNN8 435 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 CLDN5O00501 218 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 F11P03951 625 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 GRIK1P39086 918 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 TAF12Q16514 161 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 TMEM150AQ86TG1 271 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 STKLD1Q8NE28 680 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 TRMT2BQ96GJ1 504 aaKnown RBP20.56■□□□□ 0.88
SS18-208ENST00000577751 CNOT6LQ96LI5 555 aaKnown RBP20.56■□□□□ 0.88
SS18-208ENST00000577751 ASB16Q96NS5 453 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 NT5C1AQ9BXI3 368 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 ZNF518BQ9C0D4 1074 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 ATXN3LQ9H3M9 355 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 TMEM30AQ9NV96 361 aa20.56■□□□□ 0.88
SS18-208ENST00000577751 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.56■□□□□ 0.88
SS18-208ENST00000577751 TRIOO75962 3097 aa20.55■□□□□ 0.88
SS18-208ENST00000577751 TRIM66O15016 1216 aa20.55■□□□□ 0.88
SS18-208ENST00000577751 ECI2O75521 394 aa20.55■□□□□ 0.88
SS18-208ENST00000577751 FCARP24071 287 aa20.55■□□□□ 0.88
SS18-208ENST00000577751 CDC25CP30307 473 aa20.55■□□□□ 0.88
SS18-208ENST00000577751 CACNA2D1P54289 1103 aa20.55■□□□□ 0.88
SS18-208ENST00000577751 ORC1Q13415 861 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms