RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CHN2P52757 468 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 SLC5A3P53794 718 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 PDK3Q15120 406 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 NONOQ15233 471 aaKnown RBP eCLIP11.34□□□□□ -0.595e-7■■□□□ 13.6
CLK3-226ENST00000569406 CDONQ4KMG0 1287 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 TMC5Q6UXY8 1006 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 MKNK1Q9BUB5 465 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 SHCBP1LQ9BZQ2 653 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 PI4KBQ9UBF8 816 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 FAM198AQ9UFP1 575 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 TFAP2AP05549 437 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 T-ENOLP0DO92 83 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 CPA3P15088 417 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 MAGEA1P43355 309 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 GBE1Q04446 702 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 PDAP1Q13442 181 aaKnown RBP11.34□□□□□ -0.59
CLK3-226ENST00000569406 TAF1BQ53T94 588 aaPredicted RBP11.34□□□□□ -0.59
CLK3-226ENST00000569406 PAOXQ6QHF9 649 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 KRT25Q7Z3Z0 450 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 ITIH5Q86UX2 942 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 C2CD5Q86YS7 1000 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 PASD1Q8IV76 773 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 NELFCDQ8IXH7 590 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 HACE1Q8IYU2 909 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 ANKRD13AQ8IZ07 590 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 NOC4LQ9BVI4 516 aaKnown RBP11.34□□□□□ -0.59
CLK3-226ENST00000569406 PLEKHA5Q9HAU0 1116 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 FANCEQ9HB96 536 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 UBN1Q9NPG3 1134 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 RNF14Q9UBS8 474 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 AMACRQ9UHK6 382 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 SALL4Q9UJQ4 1053 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.34□□□□□ -0.59
CLK3-226ENST00000569406 MYO3BQ8WXR4 1341 aa11.34□□□□□ -0.59
CLK3-226ENST00000569406 KIF13BQ9NQT8 1826 aa11.33□□□□□ -0.59
CLK3-226ENST00000569406 DDTLA6NHG4 134 aaPredicted RBP11.33□□□□□ -0.6
CLK3-226ENST00000569406 FXR2P51116 673 aaKnown RBP eCLIP11.33□□□□□ -0.6
CLK3-226ENST00000569406 DSTNP60981 165 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 ASPHQ12797 758 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 RRP1BQ14684 758 aaKnown RBP11.33□□□□□ -0.6
CLK3-226ENST00000569406 KLHDC7AQ5VTJ3 777 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 ITPRIPL1Q6GPH6 555 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 AK8Q96MA6 479 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 FMO2Q99518 471 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 MIPEPQ99797 713 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 CTRCQ99895 268 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 PYM1Q9BRP8 204 aaKnown RBP11.33□□□□□ -0.6
CLK3-226ENST00000569406 OSBPL6Q9BZF3 934 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 EPB41L1Q9H4G0 881 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 MAN1C1Q9NR34 630 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 ERVK-11Q9UQG0 969 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 PCDHGA11Q9Y5H2 935 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 MYMKA6NI61 221 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 LGALS16A8MUM7 142 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.33□□□□□ -0.6
CLK3-226ENST00000569406 CCRL2O00421 344 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 AQP9O43315 295 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 EXOC3O60645 756 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 GAS8O95995 478 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 APLP1P51693 650 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 ZNF135P52742 658 aaPredicted RBP11.33□□□□□ -0.6
CLK3-226ENST00000569406 CYP2A13Q16696 494 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 TBC1D10BQ4KMP7 808 aaPredicted RBP11.33□□□□□ -0.6
CLK3-226ENST00000569406 ZNF662Q6ZS27 426 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 ZSCAN29Q8IWY8 852 aaPredicted RBP11.33□□□□□ -0.6
CLK3-226ENST00000569406 METTL25Q8N6Q8 603 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 ASIC4Q96FT7 647 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 NEK6Q9HC98 313 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 THEGQ9P2T0 379 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 SERPINB13Q9UIV8 391 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 RPL26L1Q9UNX3 145 aaKnown RBP11.33□□□□□ -0.6
CLK3-226ENST00000569406 ZBED4O75132 1171 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 AGTP01019 485 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 GH1P01241 217 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 ANPEPP15144 967 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 CREB1P16220 341 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 AMPD1P23109 780 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 C21orf59P57076 290 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 DLG1Q12959 904 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 SLC29A2Q14542 456 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 HHIPL2Q6UWX4 724 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 CCBE1Q6UXH8 406 aaPredicted RBP11.33□□□□□ -0.6
CLK3-226ENST00000569406 TMC7Q7Z402 723 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 MB21D1Q8N884 522 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 OR6Y1Q8NGX8 325 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 ACTRT1Q8TDG2 376 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 PEX13Q92968 403 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 DACT3Q96B18 629 aaPredicted RBP11.33□□□□□ -0.6
CLK3-226ENST00000569406 SPOCK3Q9BQ16 436 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 DCUN1D5Q9BTE7 237 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 FGFBP2Q9BYJ0 223 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 C8orf4Q9NR00 106 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 GMIPQ9P107 970 aa11.33□□□□□ -0.6
CLK3-226ENST00000569406 A0A088AWK7 358 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 C15orf38-AP3S2A0A0A6YYH1 394 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 POTEMA6NI47 508 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 KCNK3O14649 394 aa11.32□□□□□ -0.6
CLK3-226ENST00000569406 TNPO2O14787 897 aaKnown RBP11.32□□□□□ -0.6
CLK3-226ENST00000569406 KRT18P05783 430 aaKnown RBP11.32□□□□□ -0.6
CLK3-226ENST00000569406 PTPN2P17706 415 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms