RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CCDC150Q8NCX0 1101 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 MYCBPAPQ8TBZ2 947 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 GPR152Q8TDT2 470 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 TFAP2BQ92481 460 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 CASP10Q92851 521 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 PPP2R3CQ969Q6 453 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 NAA15Q9BXJ9 866 aaKnown RBP10.43□□□□□ -0.74
CLK3-208ENST00000562626 CEP72Q9P209 647 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 APEX2Q9UBZ4 518 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 DNAJC12Q9UKB3 198 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 YIPF1Q9Y548 306 aa10.43□□□□□ -0.74
CLK3-208ENST00000562626 TTC28Q96AY4 2481 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 CCDC195A0A1B0GUA6 201 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 MBTPS2O43462 519 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 CAVIN2O95810 425 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 CFHP08603 1231 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 HAPLN1P10915 354 aaPredicted RBP10.42□□□□□ -0.74
CLK3-208ENST00000562626 P4HA1P13674 534 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 BDNFP23560 247 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 PCSK1P29120 753 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 PBX1P40424 430 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 TSPY1Q01534 308 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 CYP27A1Q02318 531 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 GCNT1Q02742 428 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 UBXN1Q04323 297 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 TWF1Q12792 350 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 MTMR3Q13615 1198 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 NR1I3Q14994 352 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 TMEM270Q6UE05 265 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 FAM35AQ86V20 835 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 UNC93AQ86WB7 457 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 HS6ST3Q8IZP7 471 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 SMRP1Q8NCR6 262 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 ZMIZ2Q8NF64 920 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 HLA-CQ95604 372 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 ERGIC2Q96RQ1 377 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 SFXN1Q9H9B4 322 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 FAM207AQ9NSI2 230 aaPredicted RBP10.42□□□□□ -0.74
CLK3-208ENST00000562626 IFNKQ9P0W0 207 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 CD207Q9UJ71 328 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 CNTN6Q9UQ52 1028 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 ARIH1Q9Y4X5 557 aaPredicted RBP10.42□□□□□ -0.74
CLK3-208ENST00000562626 PCDHB5Q9Y5E4 795 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 PCDHB4Q9Y5E5 795 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 TICRRQ7Z2Z1 1910 aa10.42□□□□□ -0.74
CLK3-208ENST00000562626 COL4A2P08572 1712 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 FOXN3O00409 490 aaPredicted RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 PRRG1O14668 218 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 C1RP00736 705 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 IL9P15248 144 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 TBXAS1P24557 533 aaPredicted RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 ADORA2BP29275 332 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 USP46P62068 366 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 CETN1Q12798 172 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 DDR2Q16832 855 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 SLC5A9Q2M3M2 681 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 MGAT5BQ3V5L5 792 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 LEXMQ3ZCV2 418 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 PPM1LQ5SGD2 360 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 PPP1R26Q5T8A7 1209 aaPredicted RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 GPR149Q86SP6 731 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 ALYREFQ86V81 257 aaKnown RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 SPATA2LQ8IUW3 424 aaPredicted RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 DCP1BQ8IZD4 617 aaKnown RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 RBBP8NLQ8NC74 664 aaPredicted RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 SLC2A14Q8TDB8 520 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 GIPC2Q8TF65 315 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 HDAC7Q8WUI4 952 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 SHC3Q92529 594 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 SUSD6Q92537 303 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 TMEM176AQ96HP8 235 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 FAXDC2Q96IV6 333 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 KCNK16Q96T55 309 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 SEPT5Q99719 369 aaPredicted RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 SMOQ99835 787 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 NT5C1AQ9BXI3 368 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 LRRC3Q9BY71 257 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 OXCT2Q9BYC2 517 aaPredicted RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 PRKD2Q9BZL6 878 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 XPO4Q9C0E2 1151 aaKnown RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 PLEKHA4Q9H4M7 779 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 ZNF334Q9HCZ1 680 aaPredicted RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 PLCB1Q9NQ66 1216 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 DZANK1Q9NVP4 752 aa10.41□□□□□ -0.74
CLK3-208ENST00000562626 DNMT3BQ9UBC3 853 aaKnown RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 USP15Q9Y4E8 981 aaPredicted RBP10.41□□□□□ -0.74
CLK3-208ENST00000562626 F8VP50 259 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 GOLGA6L19H0YKK7 550 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 TULP2O00295 520 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 NCK2O43639 380 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 MOSPD3O75425 235 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 GABBR2O75899 941 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 SERPINC1P01008 464 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 UCHL3P15374 230 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 BRD2P25440 801 aaKnown RBP10.4□□□□□ -0.74
CLK3-208ENST00000562626 CLCN1P35523 988 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 CCR2P41597 374 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 JAM2P57087 298 aa10.4□□□□□ -0.74
CLK3-208ENST00000562626 DRAP1Q14919 205 aaPredicted RBP10.4□□□□□ -0.74
CLK3-208ENST00000562626 NFE2Q16621 373 aaPredicted RBP10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms