RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 EN2P19622 333 aaPredicted RBP9.7□□□□□ -0.86
VPS39-205ENST00000562258 GJA9P57773 515 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 MYLK4Q86YV6 388 aaPredicted RBP9.7□□□□□ -0.86
VPS39-205ENST00000562258 PDZD7Q9H5P4 517 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 ARHGAP28Q9P2N2 729 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 PLAGL2Q9UPG8 496 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 F8VZ95 297 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 CKBP12277 381 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 ATICP31939 592 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 RAD51Q06609 339 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 PKN2Q16513 984 aaKnown RBP9.7□□□□□ -0.86
VPS39-205ENST00000562258 WHAMMP3Q1A5X7 153 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 ELOA2Q8IYF1 753 aaPredicted RBP9.7□□□□□ -0.86
VPS39-205ENST00000562258 DAW1Q8N136 415 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 FAF2Q96CS3 445 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 RPGRIP1Q96KN7 1286 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 CYP3A43Q9HB55 503 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.7□□□□□ -0.86
VPS39-205ENST00000562258 TSR3Q9UJK0 312 aaKnown RBP9.7□□□□□ -0.86
VPS39-205ENST00000562258 GIT1Q9Y2X7 761 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 BRWD3Q6RI45 1802 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 ERICH4A6NGS2 130 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 GPD1P21695 349 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 COMTP21964 271 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 GRM5P41594 1212 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 PDE1BQ01064 536 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 MYBPC2Q14324 1141 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 PPP2R2DQ66LE6 453 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 NOP9Q86U38 636 aaKnown RBP9.7□□□□□ -0.86
VPS39-205ENST00000562258 LRRC43Q8N309 656 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 AFAP1L1Q8TED9 768 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 UBE2Q2Q8WVN8 375 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 SREK1Q8WXA9 508 aaKnown RBP9.7□□□□□ -0.86
VPS39-205ENST00000562258 DYRK4Q9NR20 520 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 ALG6Q9Y672 507 aa9.7□□□□□ -0.86
VPS39-205ENST00000562258 ARL5CA6NH57 179 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 B4GALT4O60513 344 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 YWHAQP27348 245 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 TUFMP49411 452 aaKnown RBP9.69□□□□□ -0.86
VPS39-205ENST00000562258 NCKAP1LP55160 1127 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 TWF1Q12792 350 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 TPGS1Q6ZTW0 290 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 BZW1Q7L1Q6 419 aaKnown RBP9.69□□□□□ -0.86
VPS39-205ENST00000562258 TFAP2DQ7Z6R9 452 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 FAM228AQ86W67 206 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 PXYLP1Q8TE99 480 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 C16orf70Q9BSU1 422 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 TRIM62Q9BVG3 475 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 ATP8A1Q9Y2Q0 1164 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 GIPC1O14908 333 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 ADH1AP07327 375 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 PMLP29590 882 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 MBTD1Q05BQ5 628 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 GRIK3Q13003 919 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 CDKAL1Q5VV42 579 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 DENND5BQ6ZUT9 1274 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 EFHBQ8N7U6 833 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 MCUQ8NE86 351 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 OR6P1Q8NGX9 317 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 FEZF2Q8TBJ5 459 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 RXFP2Q8WXD0 754 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 BADQ92934 168 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 IFT43Q96FT9 208 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 ULBP1Q9BZM6 244 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 DMAP1Q9NPF5 467 aaPredicted RBP9.69□□□□□ -0.86
VPS39-205ENST00000562258 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.69□□□□□ -0.86
VPS39-205ENST00000562258 SMARCAL1Q9NZC9 954 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 MYH3P11055 1940 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 SPEF2Q9C093 1822 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 COL1A2P08123 1366 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 ESYT3A0FGR9 886 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 MIF4GDA9UHW6 222 aaKnown RBP9.69□□□□□ -0.86
VPS39-205ENST00000562258 M0R2N6 131 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 CPP00450 1065 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 GATMP50440 423 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 LMNB2Q03252 620 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 SPIRE1Q08AE8 756 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 NAB2Q15742 525 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 PCSK7Q16549 785 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 ZACNQ401N2 412 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 EFCAB13Q8IY85 973 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 TTC8Q8TAM2 541 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 MGARPQ8TDB4 240 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 TTPALQ9BTX7 342 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 AGO3Q9H9G7 860 aaKnown RBP9.69□□□□□ -0.86
VPS39-205ENST00000562258 CHST12Q9NRB3 414 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 DPP7Q9UHL4 492 aa9.69□□□□□ -0.86
VPS39-205ENST00000562258 THSD7AQ9UPZ6 1657 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 SSU72P8A0A1W2PR75 194 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 EEF2KO00418 725 aaKnown RBP9.68□□□□□ -0.86
VPS39-205ENST00000562258 ADCY6O43306 1168 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 HDCP19113 662 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 SLC11A2P49281 568 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 HYIQ5T013 277 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 PHLDB3Q6NSJ2 640 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 LRRC55Q6ZSA7 311 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 ZNF571Q7Z3V5 609 aaPredicted RBP9.68□□□□□ -0.86
VPS39-205ENST00000562258 FAM172AQ8WUF8 416 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 PCYT2Q99447 389 aa9.68□□□□□ -0.86
VPS39-205ENST00000562258 OSGEPQ9NPF4 335 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms