RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 NBPF20Q3BBV1 942 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 PPP1R15BQ5SWA1 713 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 ZFYVE27Q5T4F4 411 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 LIMS2Q7Z4I7 341 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 TMEM110Q86TL2 294 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 KLHL7Q8IXQ5 586 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 ADGRF2Q8IZF7 708 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 URGCPQ8TCY9 931 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 ALG3Q92685 438 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 APBB2Q92870 758 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 MS4A14Q96JA4 679 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 MCEEQ96PE7 176 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 OSBPL8Q9BZF1 889 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 TSPYL2Q9H2G4 693 aaPredicted RBP7.92□□□□□ -1.14
VPS39-204ENST00000561818 SMYD3Q9H7B4 428 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 ZNF446Q9NWS9 450 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 PSD3Q9NYI0 1048 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 STAP1Q9ULZ2 295 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 PACSIN2Q9UNF0 486 aaPredicted RBP7.92□□□□□ -1.14
VPS39-204ENST00000561818 SNX9Q9Y5X1 595 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 ANK1P16157 1881 aa7.92□□□□□ -1.14
VPS39-204ENST00000561818 A0A0U1RQF3 1178 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 TCRBV5S1A1TA0A578 114 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 HMGB1P1B2RPK0 211 aaPredicted RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 BHMG1C9JSJ3 638 aaPredicted RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 XPO1O14980 1071 aaKnown RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 MDM4O15151 490 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 ADCY6O43306 1168 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 PRPSAP2O60256 369 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 FKTNO75072 461 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 ASGR1P07306 291 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 IVLP07476 585 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 MYZAPP0CAP1 466 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 GPD1P21695 349 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 SDC4P31431 198 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 STIP1P31948 543 aaKnown RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 ACTN2P35609 894 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 GNL1P36915 607 aaPredicted RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 COILP38432 576 aaPredicted RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 GPD2P43304 727 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 SSR1P43307 286 aaKnown RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 PTPN9P43378 593 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 PLA2G4AP47712 749 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 RPL34P49207 117 aaKnown RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 PLCB3Q01970 1234 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 CACNB2Q08289 660 aaPredicted RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 MGAT3Q09327 533 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 ITGA7Q13683 1181 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 PTK6Q13882 451 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 PTGISQ16647 500 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 SEZ6Q53EL9 994 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 PRAMEF19Q5SWL8 479 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 DUPD1Q68J44 220 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 PPP1R21Q6ZMI0 780 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 SND1Q7KZF4 910 aaKnown RBP eCLIP7.91□□□□□ -1.14
VPS39-204ENST00000561818 TRMT10CQ7L0Y3 403 aaKnown RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 BEND5Q7L4P6 421 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 SLC26A9Q7LBE3 791 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 STRADAQ7RTN6 431 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 FAM228AQ86W67 206 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 JAMLQ86YT9 394 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 PASD1Q8IV76 773 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 THEM5Q8N1Q8 247 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 SCML4Q8N228 414 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 PLCD3Q8N3E9 789 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 OR6B3Q8NGW1 331 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 KCTD13Q8WZ19 329 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 EXOC4Q96A65 974 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 SNF8Q96H20 258 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 CEP295NLQ96MC4 621 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 TTC25Q96NG3 672 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 PPP1R10Q96QC0 940 aaKnown RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 CCDC77Q9BR77 488 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 MAK16Q9BXY0 300 aaKnown RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 SLC4A5Q9BY07 1137 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 NXF3Q9H4D5 531 aaKnown RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 ELAC1Q9H777 363 aaKnown RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 DONSONQ9NYP3 566 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 STK39Q9UEW8 545 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 AMACRQ9UHK6 382 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 TSPAN16Q9UKR8 245 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 CDH9Q9ULB4 789 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 DRG1Q9Y295 367 aaKnown RBP7.91□□□□□ -1.14
VPS39-204ENST00000561818 GRIN2DO15399 1336 aa7.91□□□□□ -1.14
VPS39-204ENST00000561818 SF3B1O75533 1304 aaKnown RBP eCLIP7.9□□□□□ -1.14
VPS39-204ENST00000561818 TMEM189-UBE2V1I3L0A0 370 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 F9P00740 461 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 KRT1P04264 644 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 CYP11A1P05108 521 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 ITGAVP06756 1048 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 PYGMP11217 842 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 ATF2P15336 505 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 TYMPP19971 482 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 TGM2P21980 687 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 HTR7P34969 479 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 NR2C2P49116 596 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 ACLYP53396 1101 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 LILRA4P59901 499 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 BEX3Q00994 111 aa7.9□□□□□ -1.14
VPS39-204ENST00000561818 ELAVL2Q12926 359 aaKnown RBP7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms