RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 AVENQ9NQS1 362 aaPredicted RBP12.89□□□□□ -0.35
SHMT2-207ENST00000553837 MTUS1Q9ULD2 1270 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 R3HDM2Q9Y2K5 976 aaKnown RBP12.89□□□□□ -0.35
SHMT2-207ENST00000553837 PTPRFP10586 1907 aa12.89□□□□□ -0.35
SHMT2-207ENST00000553837 H0Y3Z8 333 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 TRAFD1O14545 582 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-207ENST00000553837 TCEA3O75764 348 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 TAS2R40P59535 323 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 RNASELQ05823 741 aaKnown RBP12.88□□□□□ -0.35
SHMT2-207ENST00000553837 PTP4A2Q12974 167 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 SPDYAQ5MJ70 313 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 CHST13Q8NET6 341 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 MAIP1Q8WWC4 291 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 C11orf70Q9BRQ4 267 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 AAASQ9NRG9 546 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 PCMTD2Q9NV79 361 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 G3BP2Q9UN86 482 aaKnown RBP12.88□□□□□ -0.35
SHMT2-207ENST00000553837 PCDHB4Q9Y5E5 795 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 FAM189A1O60320 539 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 HNRNPCL1O60812 293 aaKnown RBP12.88□□□□□ -0.35
SHMT2-207ENST00000553837 ACSL3O95573 720 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 CST3P01034 146 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-207ENST00000553837 EDNRBP24530 442 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 MARK3P27448 753 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 NOMO3P69849 1222 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 CCDC6Q16204 474 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 LY6KQ17RY6 165 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 DPY19L2Q6NUT2 758 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 ZNF677Q86XU0 584 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 ABRAQ8N0Z2 381 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 ARHGAP18Q8N392 663 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 TTC8Q8TAM2 541 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 SLC7A3Q8WY07 619 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 SLC7A6OSQ96CW6 309 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-207ENST00000553837 CGRRF1Q99675 332 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 FAM118BQ9BPY3 351 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 DENND2DQ9H6A0 471 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-207ENST00000553837 DMAP1Q9NPF5 467 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-207ENST00000553837 NMRK1Q9NWW6 199 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 CHKBQ9Y259 395 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 ACTL7BQ9Y614 415 aa12.88□□□□□ -0.35
SHMT2-207ENST00000553837 MAGEA13PA6NCF6 341 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 SIGLEC16A6NMB1 481 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 MAGEB2O15479 319 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 ARIH2O95376 493 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 IVDP26440 423 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 PTPN4P29074 926 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 NSFP46459 744 aaKnown RBP12.87□□□□□ -0.35
SHMT2-207ENST00000553837 NOP14P78316 857 aaKnown RBP12.87□□□□□ -0.35
SHMT2-207ENST00000553837 OCRLQ01968 901 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 DEUP1Q05D60 604 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 USP4Q13107 963 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 MAMLD1Q13495 774 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 SGO2Q562F6 1265 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 UCMAQ8WVF2 138 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 PRPF31Q8WWY3 499 aaKnown RBP12.87□□□□□ -0.35
SHMT2-207ENST00000553837 HEMGNQ9BXL5 484 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 TLE6Q9H808 572 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 WHRNQ9P202 907 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 PDP2Q9P2J9 529 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 CNTN6Q9UQ52 1028 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 A0A0G2JMZ2 1700 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 ADCY3O60266 1144 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 ENTPD5O75356 428 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 TTC4O95801 387 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 T-ENOLP0DO92 83 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 EPHB2P29323 1055 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 GNA15P30679 374 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 FOXN2P32314 431 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 PSMC4P43686 418 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 CACNA2D1P54289 1103 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 KRT17Q04695 432 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 TMED1Q13445 227 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 RCN2Q14257 317 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 TRIP13Q15645 432 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-207ENST00000553837 TMEM63BQ5T3F8 832 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 SLFN12LQ6IEE8 588 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 DNAJC14Q6Y2X3 702 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-207ENST00000553837 FAM47EQ6ZV65 393 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 ZBTB33Q86T24 672 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 TRIM50Q86XT4 487 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 RIOX2Q8IUF8 465 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 UBR7Q8N806 425 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 GBP5Q96PP8 586 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 PPP1R12CQ9BZL4 782 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 DNAAF2Q9NVR5 837 aaKnown RBP12.87□□□□□ -0.35
SHMT2-207ENST00000553837 LGALS13Q9UHV8 139 aa12.87□□□□□ -0.35
SHMT2-207ENST00000553837 PAPPA2Q9BXP8 1791 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 A0A1B0GVG6 124 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 ZBTB42B2RXF5 422 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 MSCO60682 206 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 PROSCO94903 275 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 TCF4P15884 667 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 ITIH2P19823 946 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 CHKAP35790 457 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 TCF7P36402 384 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-207ENST00000553837 STAT5BP51692 787 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 NCOA4Q13772 614 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 SNX30Q5VWJ9 437 aa12.86□□□□□ -0.35
SHMT2-207ENST00000553837 TMEM130Q8N3G9 435 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms