RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 DUS2Q9NX74 493 aaKnown RBP13.77□□□□□ -0.21
SCAF11-208ENST00000546534 KCNG1Q9UIX4 513 aa13.77□□□□□ -0.21
SCAF11-208ENST00000546534 KLK13Q9UKR3 277 aa13.77□□□□□ -0.21
SCAF11-208ENST00000546534 DSEQ9UL01 958 aa13.77□□□□□ -0.21
SCAF11-208ENST00000546534 MAGED2Q9UNF1 606 aaPredicted RBP13.77□□□□□ -0.21
SCAF11-208ENST00000546534 MSRB2Q9Y3D2 182 aa13.77□□□□□ -0.21
SCAF11-208ENST00000546534 WNT6Q9Y6F9 365 aa13.77□□□□□ -0.21
SCAF11-208ENST00000546534 ABCA7Q8IZY2 2146 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 ANTXRLA6NF34 631 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 CYB561D2O14569 222 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 NFICP08651 508 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 TRAPPC10P48553 1259 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 LIG4P49917 911 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 SMARCB1Q12824 385 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 IL17AQ16552 155 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 SDHAF4Q5VUM1 108 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 WSCD1Q658N2 575 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 ANO7Q6IWH7 933 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 RASSF3Q86WH2 238 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 METTL23Q86XA0 190 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 THEM5Q8N1Q8 247 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 USP33Q8TEY7 942 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 OSCP1Q8WVF1 389 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 CYP2S1Q96SQ9 504 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 PYM1Q9BRP8 204 aaKnown RBP13.76□□□□□ -0.21
SCAF11-208ENST00000546534 EVLQ9UI08 416 aaPredicted RBP13.76□□□□□ -0.21
SCAF11-208ENST00000546534 TSC2P49815 1807 aa13.76□□□□□ -0.21
SCAF11-208ENST00000546534 LAMA1P25391 3075 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 NPHP3-ACAD11A0A0J9YXS1 232 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 SPAARA0A1B0GVQ0 90 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 TADA3O75528 432 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 MAPK8P45983 427 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 IFNAR2P48551 515 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 NCKAP1LP55160 1127 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 ANAPC15P60006 121 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 FAM160A1Q05DH4 1040 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 ZRSR1Q15695 479 aaKnown RBP13.75□□□□□ -0.21
SCAF11-208ENST00000546534 ZNF77Q15935 545 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 EML3Q32P44 896 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 C2orf27AQ580R0 203 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 TRIM61Q5EBN2 209 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 CD302Q8IX05 232 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 MDGA1Q8NFP4 955 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 ATP2A3Q93084 1043 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 CNOT6LQ96LI5 555 aaKnown RBP13.75□□□□□ -0.21
SCAF11-208ENST00000546534 SLC22A12Q96S37 553 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 PI4K2AQ9BTU6 479 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 SLC32A1Q9H598 525 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 TMLHEQ9NVH6 421 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 NOL7Q9UMY1 257 aaKnown RBP13.75□□□□□ -0.21
SCAF11-208ENST00000546534 PCDHB6Q9Y5E3 794 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 PCDHB5Q9Y5E4 795 aa13.75□□□□□ -0.21
SCAF11-208ENST00000546534 NUP205Q92621 2012 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 K7EQS6 105 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 TAF4O00268 1085 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 HNRNPDLO14979 420 aaKnown RBP13.74□□□□□ -0.21
SCAF11-208ENST00000546534 PRPF40AO75400 957 aaKnown RBP13.74□□□□□ -0.21
SCAF11-208ENST00000546534 CSH1P0DML2 217 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 CSH2P0DML3 217 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 TOB1P50616 345 aaPredicted RBP13.74□□□□□ -0.21
SCAF11-208ENST00000546534 SEC13P55735 322 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 SIM1P81133 766 aaPredicted RBP13.74□□□□□ -0.21
SCAF11-208ENST00000546534 LMAN2Q12907 356 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 USP4Q13107 963 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 NR1H3Q13133 447 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 GNL2Q13823 731 aaKnown RBP13.74□□□□□ -0.21
SCAF11-208ENST00000546534 TMEM132DQ14C87 1099 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 PIP4P1Q86T03 277 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 TTC30AQ86WT1 665 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 DCP1BQ8IZD4 617 aaKnown RBP13.74□□□□□ -0.21
SCAF11-208ENST00000546534 CCDC33Q8N5R6 958 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 SYT2Q8N9I0 419 aaPredicted RBP13.74□□□□□ -0.21
SCAF11-208ENST00000546534 OLIG1Q8TAK6 271 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 RLN3Q8WXF3 142 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 PLIN2Q99541 437 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 NUSAP1Q9BXS6 441 aaKnown RBP13.74□□□□□ -0.21
SCAF11-208ENST00000546534 LINC00597Q9H2U6 94 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 TRPC7Q9HCX4 862 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 TMEM74BQ9NUR3 256 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 CPSF3Q9UKF6 684 aaKnown RBP13.74□□□□□ -0.21
SCAF11-208ENST00000546534 MMP17Q9ULZ9 603 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 DERAQ9Y315 318 aa13.74□□□□□ -0.21
SCAF11-208ENST00000546534 THADAQ6YHU6 1953 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 A0A0B4J269 797 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 H0YCG3 227 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 TNFRSF10BO14763 440 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 PIGRP01833 764 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 USP17L7P0C7H9 530 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 HNRNPLP14866 589 aaKnown RBP eCLIP13.73□□□□□ -0.21
SCAF11-208ENST00000546534 ENGP17813 658 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 OPRD1P41143 372 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 P2RY2P41231 377 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 TAF6P49848 677 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 SLC12A3P55017 1021 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 SEMA3BQ13214 749 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 CRY1Q16526 586 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 DDR2Q16832 855 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 ARMCX6Q7L4S7 300 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 EFCAB13Q8IY85 973 aa13.73□□□□□ -0.21
SCAF11-208ENST00000546534 FBXO18Q8NFZ0 1043 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms