RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 EPM2AIP1Q7L775 607 aaPredicted RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 FAM228AQ86W67 206 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 RASSF3Q86WH2 238 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 CCDC65Q8IXS2 484 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 DAW1Q8N136 415 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 HERVK_113Q902F9 699 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 TSPAN18Q96SJ8 248 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 C7orf25Q9BPX7 421 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 NFKBIZQ9BYH8 718 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 PRO3102Q9H379 93 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 ZNF576Q9H609 170 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 ERVK-5Q9HDB9 667 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 PANK4Q9NVE7 773 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 HOOK1Q9UJC3 728 aaKnown RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 PHLPP2Q6ZVD8 1323 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 LAMA3Q16787 3333 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 BICDL2A1A5D9 508 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 LINC01387J3KSC0 135 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 K7ENM7 598 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 K7ERI5 159 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 GNB5O14775 395 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 SLC16A4O15374 487 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 KINO60870 393 aaKnown RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 AMHP03971 560 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 ITPKAP23677 461 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 ZNF131P52739 623 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 LMNB2Q03252 620 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 MBTD1Q05BQ5 628 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 BIRC3Q13489 604 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 SHHQ15465 462 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 MAPK6Q16659 721 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 HERC4Q5GLZ8 1057 aaPredicted RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 C9orf50Q5SZB4 431 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 RNF219Q5W0B1 726 aaPredicted RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 CDCA2Q69YH5 1023 aaPredicted RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 FAM117BQ6P1L5 589 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 IGF2-ASQ6U949 168 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 GRAMD1CQ8IYS0 662 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 TDHQ8IZJ6 230 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 FMR1NBQ8N0W7 255 aaPredicted RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 DNAJC19Q96DA6 116 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 VWCEQ96DN2 955 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 TRIM11Q96F44 468 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 NTPCRQ9BSD7 190 aaKnown RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 KIFC3Q9BVG8 833 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 TRIM9Q9C026 710 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 BLZF1Q9H2G9 400 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 CLEC4MQ9H2X3 399 aaPredicted RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 MINDY3Q9H8M7 445 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 MRPL44Q9H9J2 332 aaKnown RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 LUC7LQ9NQ29 371 aaKnown RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 PRMT7Q9NVM4 692 aaPredicted RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 SEL1LQ9UBV2 794 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 PIN4Q9Y237 131 aaKnown RBP5.55□□□□□ -1.52
CLIP1-217ENST00000543205 SLC4A7Q9Y6M7 1214 aa5.55□□□□□ -1.52
CLIP1-217ENST00000543205 ARID2Q68CP9 1835 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 EVPLQ92817 2033 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 PVALEFA0A1B0GWK0 134 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 A0A1W2PRQ8 180 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 H3BRJ5 948 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 SOX1O00570 391 aaPredicted RBP5.54□□□□□ -1.52
CLIP1-217ENST00000543205 PRKCBP05771 671 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 SCP2P22307 547 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 CASP1P29466 404 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 AXLP30530 894 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 ABCD1P33897 745 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 ID4P47928 161 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 NCKAP1LP55160 1127 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 CLCQ05315 142 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 PCDH1Q08174 1060 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 PRPF4BQ13523 1007 aaKnown RBP5.54□□□□□ -1.52
CLIP1-217ENST00000543205 SNW1Q13573 536 aaKnown RBP5.54□□□□□ -1.52
CLIP1-217ENST00000543205 CUL4BQ13620 913 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 TCTN1Q2MV58 587 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 YOD1Q5VVQ6 348 aaPredicted RBP5.54□□□□□ -1.52
CLIP1-217ENST00000543205 TWF2Q6IBS0 349 aaKnown RBP5.54□□□□□ -1.52
CLIP1-217ENST00000543205 LINC00114Q6XXX2 140 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 GK5Q6ZS86 529 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 UNC13DQ70J99 1090 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 HAUS6Q7Z4H7 955 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 VN1R5Q7Z5H4 357 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 SRLQ86TD4 932 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 ZSCAN30Q86W11 494 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 SFR1Q86XK3 245 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 KIAA1958Q8N8K9 716 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 TMEM161BQ8NDZ6 487 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 ENGASEQ8NFI3 743 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 RSPH1Q8WYR4 309 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 KISS1RQ969F8 398 aaPredicted RBP5.54□□□□□ -1.52
CLIP1-217ENST00000543205 CCDC47Q96A33 483 aaKnown RBP5.54□□□□□ -1.52
CLIP1-217ENST00000543205 PGBD4Q96DM1 585 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 CPB2Q96IY4 423 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 TIGD1Q96MW7 591 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 ADAM2Q99965 735 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 ZFYVE1Q9HBF4 777 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 RGS18Q9NS28 235 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 C1orf112Q9NSG2 853 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 DACT1Q9NYF0 836 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 TBC1D7Q9P0N9 293 aa5.54□□□□□ -1.52
CLIP1-217ENST00000543205 NUB1Q9Y5A7 615 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms