RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 COBLL1Q53SF7 1204 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 RBM20Q5T481 1227 aaKnown RBP3.94□□□□□ -1.78
USP28-210ENST00000542033 TMEM108Q6UXF1 575 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 LNX2Q8N448 690 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 B3GALNT2Q8NCR0 500 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 TOR1AIP2Q8NFQ8 470 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 PJA1Q8NG27 643 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 SLC30A5Q8TAD4 765 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 AGAP2Q99490 1192 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 AIFM2Q9BRQ8 373 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 TPSD1Q9BZJ3 242 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 ZNF518BQ9C0D4 1074 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 DDX21Q9NR30 783 aaKnown RBP eCLIP3.94□□□□□ -1.78
USP28-210ENST00000542033 CHST12Q9NRB3 414 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 SYBUQ9NX95 663 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 KCTD5Q9NXV2 234 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 C11orf21Q9P2W6 132 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 SHOC2Q9UQ13 582 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 MAST3O60307 1309 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 COL4A3Q01955 1670 aa3.94□□□□□ -1.78
USP28-210ENST00000542033 A0A087WWL8 130 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 IFRD1O00458 451 aaPredicted RBP3.93□□□□□ -1.78
USP28-210ENST00000542033 DCLK1O15075 740 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 YY2O15391 372 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 ESRRBO95718 433 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 LMNAP02545 664 aaKnown RBP3.93□□□□□ -1.78
USP28-210ENST00000542033 IFIT2P09913 472 aaKnown RBP3.93□□□□□ -1.78
USP28-210ENST00000542033 SRGNP10124 158 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 PPP3CBP16298 524 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 RPL17P18621 184 aaKnown RBP3.93□□□□□ -1.78
USP28-210ENST00000542033 TOB1P50616 345 aaPredicted RBP3.93□□□□□ -1.78
USP28-210ENST00000542033 ZNF134P52741 427 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 SEC24CP53992 1094 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 WNT3P56703 355 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 LILRA4P59901 499 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 FMO1Q01740 532 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 KRT17Q04695 432 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 ITIH3Q06033 890 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 BOP1Q14137 746 aaKnown RBP3.93□□□□□ -1.78
USP28-210ENST00000542033 MORC3Q14149 939 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 SAFBQ15424 915 aaKnown RBP eCLIP3.93□□□□□ -1.78
USP28-210ENST00000542033 MGAT5BQ3V5L5 792 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 SFRP4Q6FHJ7 346 aaPredicted RBP3.93□□□□□ -1.78
USP28-210ENST00000542033 CYB5RLQ6IPT4 315 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 PCSK4Q6UW60 755 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 Q6ZNX1 250 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 TMPRSS9Q7Z410 1059 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 ZG16BQ96DA0 208 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 FBXL20Q96IG2 436 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 OSBPL9Q96SU4 736 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 NELL2Q99435 816 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 APOL5Q9BWW9 433 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 DPH1Q9BZG8 443 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 MS4A7Q9GZW8 240 aaPredicted RBP3.93□□□□□ -1.78
USP28-210ENST00000542033 A1CFQ9NQ94 594 aaKnown RBP3.93□□□□□ -1.78
USP28-210ENST00000542033 STK32BQ9NY57 414 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 LRIT1Q9P2V4 623 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 ZBTB32Q9Y2Y4 487 aaPredicted RBP3.93□□□□□ -1.78
USP28-210ENST00000542033 SNX13Q9Y5W8 968 aa3.93□□□□□ -1.78
USP28-210ENST00000542033 TRIM43BA6NCK2 446 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 RHPN2P1A8MT19 583 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 FOXN3O00409 490 aaPredicted RBP3.92□□□□□ -1.78
USP28-210ENST00000542033 ORC4O43929 436 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 RASSF9O75901 435 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 PROZP22891 400 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 LRPAP1P30533 357 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 NXPH1P58417 271 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 MRPS35P82673 323 aaKnown RBP3.92□□□□□ -1.78
USP28-210ENST00000542033 E2F2Q14209 437 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 C4orf46Q504U0 113 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 C3orf38Q5JPI3 329 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 STRIP1Q5VSL9 837 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 ICE2Q659A1 982 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 VWA1Q6PCB0 445 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 C11orf96Q7Z7L8 435 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 MYCBPAPQ8TBZ2 947 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 RAPGEF4Q8WZA2 1011 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 LPIN2Q92539 896 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 TRIM43Q96BQ3 446 aaPredicted RBP3.92□□□□□ -1.78
USP28-210ENST00000542033 FAM136AQ96C01 138 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 NMD3Q96D46 503 aaKnown RBP3.92□□□□□ -1.78
USP28-210ENST00000542033 PGBD1Q96JS3 809 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 PTDSS2Q9BVG9 487 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 ACTRT3Q9BYD9 372 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 BTBD1Q9H0C5 482 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 SMURF2Q9HAU4 748 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 ZNHIT2Q9UHR6 403 aa3.92□□□□□ -1.78
USP28-210ENST00000542033 EPN1Q9Y6I3 576 aaPredicted RBP3.92□□□□□ -1.78
USP28-210ENST00000542033 MBD3L4A6NDZ8 208 aaPredicted RBP3.91□□□□□ -1.78
USP28-210ENST00000542033 MBD3L3A6NE82 208 aaPredicted RBP3.91□□□□□ -1.78
USP28-210ENST00000542033 TMEM233B4DJY2 109 aa3.91□□□□□ -1.78
USP28-210ENST00000542033 PYCARD-AS1I3L0S3 204 aa3.91□□□□□ -1.78
USP28-210ENST00000542033 PROM1O43490 865 aa3.91□□□□□ -1.78
USP28-210ENST00000542033 CHRM2P08172 466 aa3.91□□□□□ -1.78
USP28-210ENST00000542033 PPIFP30405 207 aaKnown RBP3.91□□□□□ -1.78
USP28-210ENST00000542033 CXCR5P32302 372 aa3.91□□□□□ -1.78
USP28-210ENST00000542033 FOLR3P41439 243 aa3.91□□□□□ -1.78
USP28-210ENST00000542033 RPS16P62249 146 aaKnown RBP3.91□□□□□ -1.78
USP28-210ENST00000542033 IFIT5Q13325 482 aaKnown RBP3.91□□□□□ -1.78
USP28-210ENST00000542033 ZRSR2Q15696 482 aaKnown RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms