RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 ADGRF2Q8IZF7 708 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 GPD1LQ8N335 351 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 TOP6BLQ8N6T0 577 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 SPATA18Q8TC71 538 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 ANKRD36BP1Q96IX9 119 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 ZSCAN16Q9H4T2 348 aaPredicted RBP15.17■□□□□ 0.02
SNHG1-213ENST00000540725 HPS4Q9NQG7 708 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 GTF3C4Q9UKN8 822 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 KIAA1549LQ6ZVL6 1849 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 SOBPA7XYQ1 873 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 GABRDO14764 452 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 KIAA0391O15091 583 aaKnown RBP15.16■□□□□ 0.02
SNHG1-213ENST00000540725 HRO43593 1189 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 HCRTO43612 131 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 STX6O43752 255 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 TADA3O75528 432 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 NOL4O94818 638 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 RETP07949 1114 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 PCSK1P29120 753 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 CNR2P34972 360 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 LHX1P48742 406 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 SPEM2Q0P670 501 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 SRSF5Q13243 272 aaKnown RBP15.16■□□□□ 0.02
SNHG1-213ENST00000540725 RUNX3Q13761 415 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 TRIM68Q6AZZ1 485 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 STXBP4Q6ZWJ1 553 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 GLIS3Q8NEA6 775 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 RIN3Q8TB24 985 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 TRMT2BQ96GJ1 504 aaKnown RBP15.16■□□□□ 0.02
SNHG1-213ENST00000540725 EBF3Q9H4W6 596 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 INTS13Q9NVM9 706 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 UXTQ9UBK9 157 aaPredicted RBP15.16■□□□□ 0.02
SNHG1-213ENST00000540725 CDV3Q9UKY7 258 aaKnown RBP15.16■□□□□ 0.02
SNHG1-213ENST00000540725 R3HCC1Q9Y3T6 440 aaKnown RBP15.16■□□□□ 0.02
SNHG1-213ENST00000540725 CHD8Q9HCK8 2581 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 PTPRJQ12913 1337 aa15.16■□□□□ 0.02
SNHG1-213ENST00000540725 HOXA6P31267 233 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 HOXC13P31276 330 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 ATXN1P54253 815 aaKnown RBP15.15■□□□□ 0.02
SNHG1-213ENST00000540725 MYO1EQ12965 1108 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 ZNF268Q14587 947 aaPredicted RBP15.15■□□□□ 0.02
SNHG1-213ENST00000540725 SOWAHAQ2M3V2 549 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 CFAP221Q4G0U5 840 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 CC2D1AQ6P1N0 951 aaPredicted RBP15.15■□□□□ 0.02
SNHG1-213ENST00000540725 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.15■□□□□ 0.02
SNHG1-213ENST00000540725 CBWD2Q8IUF1 395 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 SPATA2LQ8IUW3 424 aaPredicted RBP15.15■□□□□ 0.02
SNHG1-213ENST00000540725 LINC00301Q8NCQ3 95 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 OR5B17Q8NGF7 314 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 HPS3Q969F9 1004 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 FUBP3Q96I24 572 aaKnown RBP eCLIP15.15■□□□□ 0.02
SNHG1-213ENST00000540725 MYRFLQ96LU7 910 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 TNMDQ9H2S6 317 aa15.15■□□□□ 0.02
SNHG1-213ENST00000540725 OTOL1A6NHN0 477 aaPredicted RBP15.14■□□□□ 0.01
SNHG1-213ENST00000540725 ZNF233A6NK53 670 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 LRP3O75074 770 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 TNNC2P02585 160 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 ARSAP15289 507 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 GRSF1Q12849 480 aaKnown RBP eCLIP15.14■□□□□ 0.01
SNHG1-213ENST00000540725 SURF1Q15526 300 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 E2F4Q16254 413 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 TMEM196Q5HYL7 178 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 FSTL4Q6MZW2 842 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 PKN3Q6P5Z2 889 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 WDR5BQ86VZ2 330 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 SCN4BQ8IWT1 228 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 CHFRQ96EP1 664 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 HPDLQ96IR7 371 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 TRIM9Q9C026 710 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 LRRC27Q9C0I9 530 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 TRPC7Q9HCX4 862 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 KBTBD4Q9NVX7 518 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 HSPBP1Q9NZL4 362 aa15.14■□□□□ 0.01
SNHG1-213ENST00000540725 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.14■□□□□ 0.01
SNHG1-213ENST00000540725 K7ELQ4 463 aaPredicted RBP15.13■□□□□ 0.01
SNHG1-213ENST00000540725 TRDMT1O14717 391 aaKnown RBP15.13■□□□□ 0.01
SNHG1-213ENST00000540725 SPTLC2O15270 562 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 HOXD13P35453 343 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 MAGEA11P43364 429 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 ASIC1P78348 528 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 FAM160A1Q05DH4 1040 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 MTF1Q14872 753 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 PDGFRLQ15198 375 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 DUOXA2Q1HG44 320 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 FAM171BQ6P995 826 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 C4orf50Q6ZRC1 276 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 CEP68Q76N32 757 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 DPH6Q7L8W6 267 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 LIMS2Q7Z4I7 341 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 KBTBD7Q8WVZ9 684 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 SLC22A12Q96S37 553 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 SYT15Q9BQS2 421 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 RTKNQ9BST9 563 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 CUEDC2Q9H467 287 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 MYOFQ9NZM1 2061 aa15.13■□□□□ 0.01
SNHG1-213ENST00000540725 TRAV19A0A0A6YYK7 116 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 EIF3DO15371 548 aaKnown RBP eCLIP15.12■□□□□ 0.01
SNHG1-213ENST00000540725 PPP6R2O75170 966 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 ATP2C2O75185 946 aa15.12■□□□□ 0.01
SNHG1-213ENST00000540725 CKMP06732 381 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms