RNA–Protein interactions for RNA: ENST00000538970.5

VAMP1-206, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 1 (best)

Gene VAMP1, Length 567 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-206ENST00000538970 RIN3Q8TB24 985 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 SPATA18Q8TC71 538 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 NOC3LQ8WTT2 800 aaKnown RBP13.44□□□□□ -0.26
VAMP1-206ENST00000538970 TNMDQ9H2S6 317 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 KIF9Q9HAQ2 790 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 HPS4Q9NQG7 708 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 RAB23Q9ULC3 237 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 MAGED2Q9UNF1 606 aaPredicted RBP13.44□□□□□ -0.26
VAMP1-206ENST00000538970 SNX9Q9Y5X1 595 aa13.44□□□□□ -0.26
VAMP1-206ENST00000538970 GABRDO14764 452 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 KIAA0391O15091 583 aaKnown RBP13.43□□□□□ -0.26
VAMP1-206ENST00000538970 HCRTO43612 131 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 STX6O43752 255 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 CYP2F1P24903 491 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 RPL10AP62906 217 aaKnown RBP13.43□□□□□ -0.26
VAMP1-206ENST00000538970 E2F4Q16254 413 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 SOWAHAQ2M3V2 549 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 CFAP221Q4G0U5 840 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 LMBRD2Q68DH5 695 aaPredicted RBP13.43□□□□□ -0.26
VAMP1-206ENST00000538970 TRIM68Q6AZZ1 485 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 PRR23BQ6ZRT6 265 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 MON1AQ86VX9 555 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 LONP2Q86WA8 852 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 LINC00301Q8NCQ3 95 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 MRPS31Q92665 395 aaKnown RBP13.43□□□□□ -0.26
VAMP1-206ENST00000538970 HPS3Q969F9 1004 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 CHFRQ96EP1 664 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 TRMT2BQ96GJ1 504 aaKnown RBP13.43□□□□□ -0.26
VAMP1-206ENST00000538970 MYRFLQ96LU7 910 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 GKN1Q9NS71 199 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 FOXD4L1Q9NU39 408 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 TDP1Q9NUW8 608 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 GTF3C4Q9UKN8 822 aa13.43□□□□□ -0.26
VAMP1-206ENST00000538970 FRYQ5TBA9 3013 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 OBSL1O75147 1896 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 OTOL1A6NHN0 477 aaPredicted RBP13.42□□□□□ -0.26
VAMP1-206ENST00000538970 K7ELQ4 463 aaPredicted RBP13.42□□□□□ -0.26
VAMP1-206ENST00000538970 HRO43593 1189 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 RETP07949 1114 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 PCSK1P29120 753 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 HOXA6P31267 233 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 HOXC13P31276 330 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 CNR2P34972 360 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 LHX1P48742 406 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 SPEM2Q0P670 501 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 SRSF5Q13243 272 aaKnown RBP13.42□□□□□ -0.26
VAMP1-206ENST00000538970 RUNX3Q13761 415 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 SIM2Q14190 667 aaPredicted RBP13.42□□□□□ -0.26
VAMP1-206ENST00000538970 ZNF268Q14587 947 aaPredicted RBP13.42□□□□□ -0.26
VAMP1-206ENST00000538970 STK38Q15208 465 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 TMEM196Q5HYL7 178 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 PKN3Q6P5Z2 889 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 STXBP4Q6ZWJ1 553 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 LIMS2Q7Z4I7 341 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 CBWD2Q8IUF1 395 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 OR5B17Q8NGF7 314 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 KBTBD7Q8WVZ9 684 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 FUBP3Q96I24 572 aaKnown RBP eCLIP13.42□□□□□ -0.26
VAMP1-206ENST00000538970 ANKRD36BP1Q96IX9 119 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 TRIM9Q9C026 710 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 EBF3Q9H4W6 596 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 INTS13Q9NVM9 706 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 KBTBD4Q9NVX7 518 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 UXTQ9UBK9 157 aaPredicted RBP13.42□□□□□ -0.26
VAMP1-206ENST00000538970 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.42□□□□□ -0.26
VAMP1-206ENST00000538970 ATRXP46100 2492 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 SPEGQ15772 3267 aa13.42□□□□□ -0.26
VAMP1-206ENST00000538970 ASPMQ8IZT6 3477 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 ZNF233A6NK53 670 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 SPTLC2O15270 562 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 LRP3O75074 770 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 PPP6R2O75170 966 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 TNNC2P02585 160 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 HOXD13P35453 343 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 MYO1EQ12965 1108 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 HEATR6Q6AI08 1181 aaKnown RBP13.41□□□□□ -0.26
VAMP1-206ENST00000538970 FSTL4Q6MZW2 842 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 FAM171BQ6P995 826 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 DPH6Q7L8W6 267 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 SPATA2LQ8IUW3 424 aaPredicted RBP13.41□□□□□ -0.26
VAMP1-206ENST00000538970 HPDLQ96IR7 371 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 SYT15Q9BQS2 421 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 LRRC27Q9C0I9 530 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 CUEDC2Q9H467 287 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 HSPBP1Q9NZL4 362 aa13.41□□□□□ -0.26
VAMP1-206ENST00000538970 TRDMT1O14717 391 aaKnown RBP13.4□□□□□ -0.26
VAMP1-206ENST00000538970 EIF3DO15371 548 aaKnown RBP eCLIP13.4□□□□□ -0.26
VAMP1-206ENST00000538970 ARSAP15289 507 aa13.4□□□□□ -0.26
VAMP1-206ENST00000538970 MAGEA11P43364 429 aa13.4□□□□□ -0.26
VAMP1-206ENST00000538970 PSMC1P62191 440 aaKnown RBP13.4□□□□□ -0.26
VAMP1-206ENST00000538970 FAM160A1Q05DH4 1040 aa13.4□□□□□ -0.26
VAMP1-206ENST00000538970 GRSF1Q12849 480 aaKnown RBP eCLIP13.4□□□□□ -0.26
VAMP1-206ENST00000538970 USP4Q13107 963 aa13.4□□□□□ -0.26
VAMP1-206ENST00000538970 MTF1Q14872 753 aa13.4□□□□□ -0.26
VAMP1-206ENST00000538970 PDGFRLQ15198 375 aa13.4□□□□□ -0.26
VAMP1-206ENST00000538970 SURF1Q15526 300 aa13.4□□□□□ -0.26
VAMP1-206ENST00000538970 ZNF77Q15935 545 aa13.4□□□□□ -0.26
VAMP1-206ENST00000538970 DUOXA2Q1HG44 320 aa13.4□□□□□ -0.26
VAMP1-206ENST00000538970 CC2D1AQ6P1N0 951 aaPredicted RBP13.4□□□□□ -0.26
VAMP1-206ENST00000538970 CNNM4Q6P4Q7 775 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms