RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 NXPE2Q96DL1 559 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 KIF2CQ99661 725 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 ARID3AQ99856 593 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 ADPGKQ9BRR6 497 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 SLC46A2Q9BY10 475 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 POLR3FQ9H1D9 316 aaPredicted RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 ECT2Q9H8V3 914 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 BCCIPQ9P287 314 aaKnown RBP eCLIP7.06□□□□□ -1.28
CD44-237ENST00000534082 VAV3Q9UKW4 847 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 ASB3Q9Y575 518 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 RBM8AQ9Y5S9 174 aaKnown RBP7.06□□□□□ -1.28
CD44-237ENST00000534082 TSC2P49815 1807 aa7.06□□□□□ -1.28
CD44-237ENST00000534082 PLXND1Q9Y4D7 1925 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 CYP3A7-CYP3A51PA0A087WV96 503 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 SMIM28A0A1B0GU29 152 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 A0A1W2PQD8 194 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 ANTXRLA6NF34 631 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 E9PAM4 449 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 PLK4O00444 970 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 ZBTB39O15060 712 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 SOAT2O75908 522 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 CYP3A7P24462 503 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 MCM4P33991 863 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 AVPR1AP37288 418 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 CSRP3P50461 194 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 ZNF33AQ06730 810 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 GRIK2Q13002 908 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 NNTQ13423 1086 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 PRPF4BQ13523 1007 aaKnown RBP7.05□□□□□ -1.28
CD44-237ENST00000534082 HDAC1Q13547 482 aaPredicted RBP7.05□□□□□ -1.28
CD44-237ENST00000534082 FAM187BQ17R55 369 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 DCAF4L1Q3SXM0 396 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 EEF1DP3Q658K8 133 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 CDCA2Q69YH5 1023 aaPredicted RBP7.05□□□□□ -1.28
CD44-237ENST00000534082 SLC36A4Q6YBV0 504 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 ITIH5Q86UX2 942 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 FMNL3Q8IVF7 1028 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 ZBTB8OSQ8IWT0 167 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 CMTM8Q8IZV2 173 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 TTC9BQ8N6N2 239 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 APPL2Q8NEU8 664 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 BAHD1Q8TBE0 780 aaPredicted RBP7.05□□□□□ -1.28
CD44-237ENST00000534082 HMGB4Q8WW32 186 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 RUFY2Q8WXA3 655 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 USP13Q92995 863 aaPredicted RBP7.05□□□□□ -1.28
CD44-237ENST00000534082 SUSD3Q96L08 255 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 PNMA5Q96PV4 448 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 PI4K2AQ9BTU6 479 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 SEMA4CQ9C0C4 833 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 SLKQ9H2G2 1235 aaPredicted RBP7.05□□□□□ -1.28
CD44-237ENST00000534082 FZD8Q9H461 694 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 KIF9Q9HAQ2 790 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 PRDM16Q9HAZ2 1276 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 RGL1Q9NZL6 768 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 USP20Q9Y2K6 914 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 GOLGA4Q13439 2230 aaKnown RBP7.05□□□□□ -1.28
CD44-237ENST00000534082 NOTCH2Q04721 2471 aa7.05□□□□□ -1.28
CD44-237ENST00000534082 TCRBV21S2A2A0A5A6 115 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 MTMR11A4FU01 709 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 K7EQS6 105 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 SGK1O00141 431 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 SLC37A4O43826 429 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 WFS1O76024 890 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 EDN1P05305 212 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 C6P13671 934 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 CDC27P30260 824 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 IL12RB1P42701 662 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 IFNAR2P48551 515 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 CXADRP78310 365 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 SEMG2Q02383 582 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 YWHAHQ04917 246 aaPredicted RBP7.04□□□□□ -1.28
CD44-237ENST00000534082 CTTNQ14247 550 aaKnown RBP7.04□□□□□ -1.28
CD44-237ENST00000534082 MTF1Q14872 753 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 SMAD1Q15797 465 aaKnown RBP7.04□□□□□ -1.28
CD44-237ENST00000534082 TUSC1Q2TAM9 212 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 PPP4R3AQ6IN85 833 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 CENPPQ6IPU0 288 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 B4GALNT3Q6L9W6 998 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 PGBD3Q8N328 593 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 ALLCQ8N6M5 410 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 ATAD1Q8NBU5 361 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 CCDC148Q8NFR7 591 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 ATP2A3Q93084 1043 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 WBP1Q96G27 269 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 DYDC2Q96IM9 177 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 HSPA12BQ96MM6 686 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 CCDC43Q96MW1 224 aaKnown RBP7.04□□□□□ -1.28
CD44-237ENST00000534082 CDC6Q99741 560 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 LPIN3Q9BQK8 851 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 ZDHHC5Q9C0B5 715 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 ZSWIM4Q9H7M6 989 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 TDP1Q9NUW8 608 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 SLC38A7Q9NVC3 462 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 DUS2Q9NX74 493 aaKnown RBP7.04□□□□□ -1.28
CD44-237ENST00000534082 DDX25Q9UHL0 483 aaKnown RBP7.04□□□□□ -1.28
CD44-237ENST00000534082 ZMYM5Q9UJ78 669 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 BRPF3Q9ULD4 1205 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 WNT6Q9Y6F9 365 aa7.04□□□□□ -1.28
CD44-237ENST00000534082 BSNQ9UPA5 3926 aa7.03□□□□□ -1.28
CD44-237ENST00000534082 KLF8O95600 359 aaPredicted RBP7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms