RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PPFIBP2Q8ND30 876 aa14.91□□□□□ -0.02
USP48-213ENST00000529637 SHKBP1Q8TBC3 707 aa14.91□□□□□ -0.02
USP48-213ENST00000529637 JPH1Q9HDC5 661 aaPredicted RBP14.91□□□□□ -0.02
USP48-213ENST00000529637 VWA5AO00534 786 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 HLA-DRAP01903 254 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 TNFAIP1Q13829 316 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 PRKG1Q13976 671 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 TRIM74Q86UV6 250 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 TRIM73Q86UV7 250 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 CCDC60Q8IWA6 550 aaPredicted RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 TMC2Q8TDI7 906 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 DDX27Q96GQ7 796 aaKnown RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 DEFB129Q9H1M3 183 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 KCNK13Q9HB14 408 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 RPS6KL1Q9Y6S9 549 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 CD58P19256 250 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 INHBCP55103 352 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 FYB2Q5VWT5 728 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 ANKMY2Q8IV38 441 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 MCOLN2Q8IZK6 566 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 MCPH1Q8NEM0 835 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 GRK7Q8WTQ7 553 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 ZBTB45Q96K62 511 aaPredicted RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 CFAP57Q96MR6 1250 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 CYTH2Q99418 400 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 TCHPQ9BT92 498 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 PREBQ9HCU5 417 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 PDP2Q9P2J9 529 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 SMG5Q9UPR3 1016 aaKnown RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 GOLGA8SH3BPF8 625 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 GOLGA8MH3BSY2 632 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 RNASEH1O60930 286 aaKnown RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 DGAT1O75907 488 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 KLRC2P26717 231 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 GAD2Q05329 585 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 KLF1Q13351 362 aaPredicted RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 DYNC1I2Q13409 638 aaKnown RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 PABPC1LQ4VXU2 614 aaKnown RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 MDH1BQ5I0G3 518 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 NBPF12Q5TAG4 269 aaPredicted RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 VSIG10LQ86VR7 867 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 ZBED8Q8IZ13 594 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 ZCCHC9Q8N567 271 aaKnown RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 DEPTORQ8TB45 409 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 DDX1Q92499 740 aaKnown RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 MFSD14AQ96MC6 490 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 ASCC2Q9H1I8 757 aaPredicted RBP14.9□□□□□ -0.02
USP48-213ENST00000529637 COQ4Q9Y3A0 265 aa14.9□□□□□ -0.02
USP48-213ENST00000529637 A6NJR5 290 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 GRIN3BO60391 1043 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 NLRP11P59045 1033 aaKnown RBP14.89□□□□□ -0.03
USP48-213ENST00000529637 ACTR2P61160 394 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 LIN9Q5TKA1 542 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 TCP10LQ8TDR4 215 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 NSUN6Q8TEA1 469 aaKnown RBP14.89□□□□□ -0.03
USP48-213ENST00000529637 FAM161BQ96MY7 647 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 CYP26B1Q9NR63 512 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 ARHGEF4Q9NR80 690 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 PICK1Q9NRD5 415 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 SLC9A2Q9UBY0 812 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 PCDHB2Q9Y5E7 798 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 PI4K2BG5E9Z4 385 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 ZBTB16Q05516 673 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 SYDE1Q6ZW31 735 aaPredicted RBP14.89□□□□□ -0.03
USP48-213ENST00000529637 RELL1Q8IUW5 271 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 RIBC1Q8N443 379 aaPredicted RBP14.89□□□□□ -0.03
USP48-213ENST00000529637 SLC25A41Q8N5S1 370 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 CCDC89Q8N998 374 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 OPTNQ96CV9 577 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 FAM210AQ96ND0 272 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 TTC1Q99614 292 aa14.89□□□□□ -0.03
USP48-213ENST00000529637 AGO2Q9UKV8 859 aaKnown RBP14.89□□□□□ -0.03
USP48-213ENST00000529637 DKC1O60832 514 aaKnown RBP eCLIP14.88□□□□□ -0.03
USP48-213ENST00000529637 ESRRAP11474 423 aaPredicted RBP14.88□□□□□ -0.03
USP48-213ENST00000529637 ATF7P17544 494 aaPredicted RBP14.88□□□□□ -0.03
USP48-213ENST00000529637 PGM1P36871 562 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 ZNF516Q92618 1163 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 TMEM120AQ9BXJ8 343 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 XPNPEP1Q9NQW7 623 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 ZNFX1Q9P2E3 1918 aaKnown RBP14.88□□□□□ -0.03
USP48-213ENST00000529637 K7ERI5 159 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 ZWINTO95229 277 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 CFHP08603 1231 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 ABHD2P08910 425 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 TROVE2P10155 538 aaKnown RBP eCLIP14.88□□□□□ -0.03
USP48-213ENST00000529637 KRT10P13645 584 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 TAS2R40P59535 323 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 LRRC36Q1X8D7 754 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 ATP13A4Q4VNC1 1196 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 ZNF394Q53GI3 561 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 SPDYAQ5MJ70 313 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 ALYREFQ86V81 257 aaKnown RBP14.88□□□□□ -0.03
USP48-213ENST00000529637 SKA1Q96BD8 255 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 WRNIP1Q96S55 665 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 TARS2Q9BW92 718 aaKnown RBP14.88□□□□□ -0.03
USP48-213ENST00000529637 FAM192AQ9GZU8 254 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 ETNK2Q9NVF9 386 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 RBAKQ9NYW8 714 aaPredicted RBP14.88□□□□□ -0.03
USP48-213ENST00000529637 ZNF212Q9UDV6 495 aa14.88□□□□□ -0.03
USP48-213ENST00000529637 BAG2O95816 211 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms