RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FAN1Q9Y2M0 1017 aa22.24■■□□□ 1.15
VPS28-208ENST00000527797 DGKIO75912 1065 aa22.23■■□□□ 1.15
VPS28-208ENST00000527797 MESDQ14696 234 aa22.23■■□□□ 1.15
VPS28-208ENST00000527797 OVOS1Q6IE37 1185 aa22.23■■□□□ 1.15
VPS28-208ENST00000527797 LLGL2Q6P1M3 1020 aa22.23■■□□□ 1.15
VPS28-208ENST00000527797 TOP1MTQ969P6 601 aa22.23■■□□□ 1.15
VPS28-208ENST00000527797 ACBD6Q9BR61 282 aa22.23■■□□□ 1.15
VPS28-208ENST00000527797 ABCB6Q9NP58 842 aa22.23■■□□□ 1.15
VPS28-208ENST00000527797 AMFRQ9UKV5 643 aa22.23■■□□□ 1.15
VPS28-208ENST00000527797 HYOU1Q9Y4L1 999 aa22.23■■□□□ 1.15
VPS28-208ENST00000527797 TTC3P53804 2025 aa22.23■■□□□ 1.15
VPS28-208ENST00000527797 KIAA0100Q14667 2235 aaKnown RBP22.22■■□□□ 1.15
VPS28-208ENST00000527797 GABRB2P47870 512 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 SLC11A1P49279 550 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 BCAT1P54687 386 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 BST2Q10589 180 aaKnown RBP22.22■■□□□ 1.15
VPS28-208ENST00000527797 ZNF268Q14587 947 aaPredicted RBP22.22■■□□□ 1.15
VPS28-208ENST00000527797 RPS6KA1Q15418 735 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 MDH1BQ5I0G3 518 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 CYP4A22Q5TCH4 519 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 KIAA0319Q5VV43 1072 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 DNAJC24Q6P3W2 148 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 NT5DC3Q86UY8 548 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 STK32AQ8WU08 396 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 IL23AQ9NPF7 189 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 CRTAC1Q9NQ79 661 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 ST7Q9NRC1 585 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 ANAPC7Q9UJX3 599 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 ADAM28Q9UKQ2 775 aa22.22■■□□□ 1.15
VPS28-208ENST00000527797 TMEM110-MUSTN1A8MSY1 372 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 ACRP10323 421 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 TCP1P17987 556 aaKnown RBP22.21■■□□□ 1.15
VPS28-208ENST00000527797 SNX16P57768 344 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 TAP1Q03518 808 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 PDE4CQ08493 712 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 C3orf20Q8ND61 904 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 FEZF2Q8TBJ5 459 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 SLC35F5Q8WV83 523 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 UBE2Q2Q8WVN8 375 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 MED10Q9BTT4 135 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 PACSIN2Q9UNF0 486 aaPredicted RBP22.21■■□□□ 1.15
VPS28-208ENST00000527797 ALG6Q9Y672 507 aa22.21■■□□□ 1.15
VPS28-208ENST00000527797 TCRBV5S1A1TA0A578 114 aa22.2■■□□□ 1.15
VPS28-208ENST00000527797 MYO1FO00160 1098 aa22.2■■□□□ 1.15
VPS28-208ENST00000527797 CAPN15O75808 1086 aa22.2■■□□□ 1.15
VPS28-208ENST00000527797 BAIAP3O94812 1187 aa22.2■■□□□ 1.15
VPS28-208ENST00000527797 ERBB2P04626 1255 aa22.2■■□□□ 1.15
VPS28-208ENST00000527797 GSCP56915 257 aaPredicted RBP22.2■■□□□ 1.15
VPS28-208ENST00000527797 SLC8A3P57103 927 aa22.2■■□□□ 1.15
VPS28-208ENST00000527797 YWHAHQ04917 246 aaPredicted RBP22.2■■□□□ 1.15
VPS28-208ENST00000527797 FUKQ8N0W3 1084 aa22.2■■□□□ 1.15
VPS28-208ENST00000527797 BTBD6Q96KE9 485 aa22.2■■□□□ 1.15
VPS28-208ENST00000527797 RTP3Q9BQQ7 232 aa22.2■■□□□ 1.15
VPS28-208ENST00000527797 SELENOOQ9BVL4 669 aa22.2■■□□□ 1.15
VPS28-208ENST00000527797 SYN3O14994 580 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 SRGAP2O75044 1071 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 GALTP07902 379 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 TKTP29401 623 aaKnown RBP22.2■■□□□ 1.14
VPS28-208ENST00000527797 WDR5P61964 334 aaKnown RBP22.2■■□□□ 1.14
VPS28-208ENST00000527797 PLCB3Q01970 1234 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 PPIGQ13427 754 aaKnown RBP eCLIP22.2■■□□□ 1.146e-8■□□□□ 10.8
VPS28-208ENST00000527797 WHAMMP3Q1A5X7 153 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 INTS6LQ5JSJ4 861 aaKnown RBP22.2■■□□□ 1.14
VPS28-208ENST00000527797 PMF1Q6P1K2 205 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 XYLT1Q86Y38 959 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 MYCBPAPQ8TBZ2 947 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 OSBPL9Q96SU4 736 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 SLC4A5Q9BY07 1137 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 HCSTQ9UBK5 93 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 TJP2Q9UDY2 1190 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 LCMT1Q9UIC8 334 aa22.2■■□□□ 1.14
VPS28-208ENST00000527797 MYBPHLA2RUH7 354 aa22.19■■□□□ 1.14
VPS28-208ENST00000527797 SLU7O95391 586 aaKnown RBP22.19■■□□□ 1.14
VPS28-208ENST00000527797 COMTP21964 271 aa22.19■■□□□ 1.14
VPS28-208ENST00000527797 RGS7P49802 495 aa22.19■■□□□ 1.14
VPS28-208ENST00000527797 PTPROQ16827 1216 aa22.19■■□□□ 1.14
VPS28-208ENST00000527797 DCUN1D2Q6PH85 259 aa22.19■■□□□ 1.14
VPS28-208ENST00000527797 DUSP16Q9BY84 665 aa22.19■■□□□ 1.14
VPS28-208ENST00000527797 B3GNT5Q9BYG0 378 aa22.19■■□□□ 1.14
VPS28-208ENST00000527797 MARCH5Q9NX47 278 aa22.19■■□□□ 1.14
VPS28-208ENST00000527797 TMEM191CA6NGB0 347 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 GOLGA8SH3BPF8 625 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 TULP2O00295 520 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 DEFB103AP81534 67 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 TSPY1Q01534 308 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 ELAVL2Q12926 359 aaKnown RBP22.18■■□□□ 1.14
VPS28-208ENST00000527797 CCDC142Q17RM4 750 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 PPP1R15BQ5SWA1 713 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 FAM171BQ6P995 826 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 PAQR9Q6ZVX9 377 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 TMEM110Q86TL2 294 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 MCRS1Q96EZ8 462 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 HES6Q96HZ4 224 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 MICAL3Q7RTP6 2002 aa22.18■■□□□ 1.14
VPS28-208ENST00000527797 SF3B1O75533 1304 aaKnown RBP eCLIP22.17■■□□□ 1.143e-6■■■■■ 56
VPS28-208ENST00000527797 SIGLEC16A6NMB1 481 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 E5RJQ4 531 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 CLDN5O00501 218 aa22.17■■□□□ 1.14
VPS28-208ENST00000527797 XPO1O14980 1071 aaKnown RBP22.17■■□□□ 1.14
VPS28-208ENST00000527797 OAZ2O95190 189 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms