RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 PCYT2Q99447 389 aa10.67□□□□□ -0.7
MCF2-209ENST00000520602 KLF6Q99612 283 aaPredicted RBP10.67□□□□□ -0.7
MCF2-209ENST00000520602 RAB6BQ9NRW1 208 aa10.67□□□□□ -0.7
MCF2-209ENST00000520602 TNFSF13BQ9Y275 285 aa10.67□□□□□ -0.7
MCF2-209ENST00000520602 MROH7Q68CQ1 1323 aa10.67□□□□□ -0.7
MCF2-209ENST00000520602 LTBP3Q9NS15 1303 aa10.67□□□□□ -0.7
MCF2-209ENST00000520602 DCDC2CA8MYV0 355 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 PPFIA2O75334 1257 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 APRTP07741 180 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 MCF2P10911 925 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 VDRP11473 427 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 UNGP13051 313 aaPredicted RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 ARF4P18085 180 aaPredicted RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 GCLCP48506 637 aaPredicted RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 STAT4Q14765 748 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 KYAT1Q16773 422 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 NOTUMQ6P988 496 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 PHF13Q86YI8 300 aaPredicted RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 DNAJB3Q8WWF6 145 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 RXFP2Q8WXD0 754 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 TSPAN16Q9UKR8 245 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 MSCO60682 206 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 MICAL2O94851 1124 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 TTC4O95801 387 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 MMP8P22894 467 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 EIF4BP23588 611 aaKnown RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 TMEM63BQ5T3F8 832 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 PPM1NQ8N819 430 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 TFAP2BQ92481 460 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 SEC16BQ96JE7 1060 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 TTC25Q96NG3 672 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 TGS1Q96RS0 853 aaKnown RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 SH3GL2Q99962 352 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 LRRC19Q9H756 370 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 IFT122Q9HBG6 1241 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 ALG13Q9NP73 1137 aaKnown RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 CHMP2BQ9UQN3 213 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 STRNO43815 780 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 CHKAP35790 457 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 CTCFP49711 727 aaPredicted RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 SARNPP82979 210 aaKnown RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 ACVR2BQ13705 512 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 GNASQ5JWF2 1037 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 CRELD2Q6UXH1 353 aaPredicted RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 C3orf62Q6ZUJ4 267 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 MON1BQ7L1V2 547 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 PCGF5Q86SE9 256 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 SCUBE3Q8IX30 993 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 C12orf29Q8N999 325 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 GTF3C2Q8WUA4 911 aaPredicted RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 MINDY3Q9H8M7 445 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 VTA1Q9NP79 307 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 CTNNAL1Q9UBT7 734 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 ABT1Q9ULW3 272 aaKnown RBP10.66□□□□□ -0.7
MCF2-209ENST00000520602 USP18Q9UMW8 372 aa10.66□□□□□ -0.7
MCF2-209ENST00000520602 PMM2O15305 246 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 GNL1P36915 607 aaPredicted RBP10.65□□□□□ -0.7
MCF2-209ENST00000520602 IRX4P78413 519 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 SKOR1P84550 965 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 CD302Q8IX05 232 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 KATNAL2Q8IYT4 538 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 TTC39CQ8N584 583 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 C3orf20Q8ND61 904 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 APPL2Q8NEU8 664 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 FBF1Q8TES7 1133 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 ASB7Q9H672 318 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 XPO7Q9UIA9 1087 aaKnown RBP10.65□□□□□ -0.7
MCF2-209ENST00000520602 CPSF3Q9UKF6 684 aaKnown RBP10.65□□□□□ -0.7
MCF2-209ENST00000520602 RRN3P2A6NIE6 340 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 GNAT1P11488 350 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 MXRA7P84157 204 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 HIBCHQ6NVY1 386 aaPredicted RBP10.65□□□□□ -0.7
MCF2-209ENST00000520602 DPY19L2P1Q6NXN4 242 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 LRRC34Q8IZ02 419 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 ATP11CQ8NB49 1132 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 JOSD2Q8TAC2 188 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 ROPN1BQ9BZX4 212 aaPredicted RBP10.65□□□□□ -0.7
MCF2-209ENST00000520602 KLC2Q9H0B6 622 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 R3HDMLQ9H3Y0 253 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 ABHD16BQ9H3Z7 469 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 TRABDQ9H4I3 376 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 ROPN1Q9HAT0 212 aaPredicted RBP10.65□□□□□ -0.7
MCF2-209ENST00000520602 FGFR1OP2Q9NVK5 253 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 BARX2Q9UMQ3 279 aaPredicted RBP10.65□□□□□ -0.7
MCF2-209ENST00000520602 E5RJQ4 531 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 PIAS1O75925 651 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 MYCP01106 439 aaPredicted RBP10.65□□□□□ -0.7
MCF2-209ENST00000520602 MIPP30301 263 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 DRG2P55039 364 aaKnown RBP10.65□□□□□ -0.7
MCF2-209ENST00000520602 MCL1Q07820 350 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 RSAD1Q9HA92 442 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 ADAMTS5Q9UNA0 930 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 PPME1Q9Y570 386 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 SBF2Q86WG5 1849 aa10.65□□□□□ -0.7
MCF2-209ENST00000520602 APOL1O14791 398 aa10.65□□□□□ -0.71
MCF2-209ENST00000520602 EZRP15311 586 aaKnown RBP10.65□□□□□ -0.71
MCF2-209ENST00000520602 PECAM1P16284 738 aaPredicted RBP10.65□□□□□ -0.71
MCF2-209ENST00000520602 HADHBP55084 474 aaKnown RBP10.65□□□□□ -0.71
MCF2-209ENST00000520602 BEX3Q00994 111 aa10.65□□□□□ -0.71
MCF2-209ENST00000520602 SPARCL1Q14515 664 aa10.65□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms