RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 RAG1P15918 1043 aa8.81□□□□□ -1
USP54-215ENST00000497106 PDGFRAP16234 1089 aa8.81□□□□□ -1
USP54-215ENST00000497106 RRM1P23921 792 aa8.81□□□□□ -1
USP54-215ENST00000497106 ZNF135P52742 658 aaPredicted RBP8.81□□□□□ -1
USP54-215ENST00000497106 RPL10AP62906 217 aaKnown RBP8.81□□□□□ -1
USP54-215ENST00000497106 YWHAHQ04917 246 aaPredicted RBP8.81□□□□□ -1
USP54-215ENST00000497106 PPP1R21Q6ZMI0 780 aa8.81□□□□□ -1
USP54-215ENST00000497106 RSRC2Q7L4I2 434 aaKnown RBP8.81□□□□□ -1
USP54-215ENST00000497106 ECHDC2Q86YB7 292 aa8.81□□□□□ -1
USP54-215ENST00000497106 ANKRD52Q8NB46 1076 aa8.81□□□□□ -1
USP54-215ENST00000497106 SPATA4Q8NEY3 305 aa8.81□□□□□ -1
USP54-215ENST00000497106 WHAMMQ8TF30 809 aa8.81□□□□□ -1
USP54-215ENST00000497106 CNTN6Q9UQ52 1028 aa8.81□□□□□ -1
USP54-215ENST00000497106 NCK2O43639 380 aa8.81□□□□□ -1
USP54-215ENST00000497106 CST3P01034 146 aaPredicted RBP8.81□□□□□ -1
USP54-215ENST00000497106 CKBP12277 381 aa8.81□□□□□ -1
USP54-215ENST00000497106 ATF2P15336 505 aa8.81□□□□□ -1
USP54-215ENST00000497106 ATN1P54259 1190 aaPredicted RBP8.81□□□□□ -1
USP54-215ENST00000497106 DR1Q01658 176 aa8.81□□□□□ -1
USP54-215ENST00000497106 INCA1Q0VD86 236 aa8.81□□□□□ -1
USP54-215ENST00000497106 VEPH1Q14D04 833 aa8.81□□□□□ -1
USP54-215ENST00000497106 ZNF618Q5T7W0 954 aa8.81□□□□□ -1
USP54-215ENST00000497106 MRPL10Q7Z7H8 261 aaKnown RBP8.81□□□□□ -1
USP54-215ENST00000497106 NPAS4Q8IUM7 802 aa8.81□□□□□ -1
USP54-215ENST00000497106 SH3TC2Q8TF17 1288 aa8.81□□□□□ -1
USP54-215ENST00000497106 NSMCE1Q8WV22 266 aa8.81□□□□□ -1
USP54-215ENST00000497106 UNC93B1Q9H1C4 597 aa8.81□□□□□ -1
USP54-215ENST00000497106 C11orf49Q9H6J7 331 aa8.81□□□□□ -1
USP54-215ENST00000497106 NGRNQ9NPE2 291 aaKnown RBP8.81□□□□□ -1
USP54-215ENST00000497106 TUBGCP4Q9UGJ1 667 aa8.81□□□□□ -1
USP54-215ENST00000497106 HES2Q9Y543 173 aa8.81□□□□□ -1
USP54-215ENST00000497106 RLFQ13129 1914 aa8.81□□□□□ -1
USP54-215ENST00000497106 CASTOR2A6NHX0 329 aa8.81□□□□□ -1
USP54-215ENST00000497106 H3BRJ5 948 aa8.81□□□□□ -1
USP54-215ENST00000497106 SYN3O14994 580 aa8.81□□□□□ -1
USP54-215ENST00000497106 CTIFO43310 598 aaKnown RBP8.81□□□□□ -1
USP54-215ENST00000497106 AP1G2O75843 785 aa8.81□□□□□ -1
USP54-215ENST00000497106 F9P00740 461 aa8.81□□□□□ -1
USP54-215ENST00000497106 C2orf54Q08AI8 447 aa8.81□□□□□ -1
USP54-215ENST00000497106 EFHC2Q5JST6 749 aa8.81□□□□□ -1
USP54-215ENST00000497106 LBHD1Q9BQE6 289 aaPredicted RBP8.81□□□□□ -1
USP54-215ENST00000497106 FAM204AQ9H8W3 233 aa8.81□□□□□ -1
USP54-215ENST00000497106 PRDM10Q9NQV6 1147 aa8.81□□□□□ -1
USP54-215ENST00000497106 METTL5Q9NRN9 209 aaKnown RBP8.81□□□□□ -1
USP54-215ENST00000497106 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.81□□□□□ -1
USP54-215ENST00000497106 SF3B1O75533 1304 aaKnown RBP eCLIP8.81□□□□□ -13e-9■■■■■ 206.8
USP54-215ENST00000497106 MYH11P35749 1972 aa8.81□□□□□ -1
USP54-215ENST00000497106 OR6C75A6NL08 312 aa8.81□□□□□ -1
USP54-215ENST00000497106 SIGLEC16A6NMB1 481 aa8.81□□□□□ -1
USP54-215ENST00000497106 PHF2O75151 1096 aa8.81□□□□□ -1
USP54-215ENST00000497106 HEXIM1O94992 359 aaKnown RBP8.81□□□□□ -1
USP54-215ENST00000497106 POMCP01189 267 aa8.81□□□□□ -1
USP54-215ENST00000497106 PTPN1P18031 435 aaKnown RBP8.81□□□□□ -1
USP54-215ENST00000497106 CXCR5P32302 372 aa8.81□□□□□ -1
USP54-215ENST00000497106 SCNN1AP37088 669 aa8.81□□□□□ -1
USP54-215ENST00000497106 SARNPP82979 210 aaKnown RBP8.81□□□□□ -1
USP54-215ENST00000497106 KRT17Q04695 432 aa8.81□□□□□ -1
USP54-215ENST00000497106 TRIM32Q13049 653 aa8.81□□□□□ -1
USP54-215ENST00000497106 PDCLQ13371 301 aa8.81□□□□□ -1
USP54-215ENST00000497106 PDK2Q15119 407 aa8.81□□□□□ -1
USP54-215ENST00000497106 EMBQ6PCB8 327 aa8.81□□□□□ -1
USP54-215ENST00000497106 EXD1Q8NHP7 514 aa8.81□□□□□ -1
USP54-215ENST00000497106 CDK5RAP1Q96SZ6 601 aaKnown RBP8.81□□□□□ -1
USP54-215ENST00000497106 ARID3AQ99856 593 aa8.81□□□□□ -1
USP54-215ENST00000497106 TMEM175Q9BSA9 504 aa8.81□□□□□ -1
USP54-215ENST00000497106 TRAIPQ9BWF2 469 aa8.81□□□□□ -1
USP54-215ENST00000497106 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.81□□□□□ -1
USP54-215ENST00000497106 ZBBXA8MT70 800 aa8.8□□□□□ -1
USP54-215ENST00000497106 IVLP07476 585 aa8.8□□□□□ -1
USP54-215ENST00000497106 GBP2P32456 591 aaPredicted RBP8.8□□□□□ -1
USP54-215ENST00000497106 COG7P83436 770 aa8.8□□□□□ -1
USP54-215ENST00000497106 LPIN1Q14693 890 aa8.8□□□□□ -1
USP54-215ENST00000497106 BTBD8Q5XKL5 378 aa8.8□□□□□ -1
USP54-215ENST00000497106 ELMOD1Q8N336 334 aa8.8□□□□□ -1
USP54-215ENST00000497106 UBA3Q8TBC4 463 aa8.8□□□□□ -1
USP54-215ENST00000497106 TMEM169Q96HH4 297 aa8.8□□□□□ -1
USP54-215ENST00000497106 GCNAQ96QF7 691 aa8.8□□□□□ -1
USP54-215ENST00000497106 DMAP1Q9NPF5 467 aaPredicted RBP8.8□□□□□ -1
USP54-215ENST00000497106 RGS18Q9NS28 235 aa8.8□□□□□ -1
USP54-215ENST00000497106 PARP14Q460N5 1801 aa8.8□□□□□ -1
USP54-215ENST00000497106 ARL5CA6NH57 179 aa8.8□□□□□ -1
USP54-215ENST00000497106 TBKBP1A7MCY6 615 aa8.8□□□□□ -1
USP54-215ENST00000497106 TRIM66O15016 1216 aa8.8□□□□□ -1
USP54-215ENST00000497106 GLI1P08151 1106 aa8.8□□□□□ -1
USP54-215ENST00000497106 LCP1P13796 627 aa8.8□□□□□ -1
USP54-215ENST00000497106 ACO1P21399 889 aaKnown RBP8.8□□□□□ -1
USP54-215ENST00000497106 HOXA11P31270 313 aaPredicted RBP8.8□□□□□ -1
USP54-215ENST00000497106 GRIK1P39086 918 aa8.8□□□□□ -1
USP54-215ENST00000497106 FNTAP49354 379 aa8.8□□□□□ -1
USP54-215ENST00000497106 GUCY2FP51841 1108 aa8.8□□□□□ -1
USP54-215ENST00000497106 ADAM17P78536 824 aa8.8□□□□□ -1
USP54-215ENST00000497106 PCGF5Q86SE9 256 aa8.8□□□□□ -1
USP54-215ENST00000497106 NT5DC3Q86UY8 548 aa8.8□□□□□ -1
USP54-215ENST00000497106 CEP57Q86XR8 500 aa8.8□□□□□ -1
USP54-215ENST00000497106 FNIP1Q8TF40 1166 aa8.8□□□□□ -1
USP54-215ENST00000497106 HAPLN2Q9GZV7 340 aa8.8□□□□□ -1
USP54-215ENST00000497106 PCDHB8Q9UN66 801 aa8.8□□□□□ -1
USP54-215ENST00000497106 ZNF148Q9UQR1 794 aa8.8□□□□□ -1
USP54-215ENST00000497106 CFAP69A5D8W1 941 aa8.8□□□□□ -1
USP54-215ENST00000497106 MMP8P22894 467 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms