RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 RESTQ13127 1097 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 RUNX3Q13761 415 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 SCN4BQ8IWT1 228 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 CSGALNACT2Q8N6G5 542 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 FAM83CQ9BQN1 747 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 STRA6Q9BX79 667 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 MTMR12Q9C0I1 747 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 FBRSL1Q9HCM7 1045 aaKnown RBP13.59□□□□□ -0.23
SKA1-205ENST00000494518 PDE11AQ9HCR9 933 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 GTF3C4Q9UKN8 822 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 EXOC7Q9UPT5 735 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 SNX9Q9Y5X1 595 aa13.59□□□□□ -0.23
SKA1-205ENST00000494518 THADAQ6YHU6 1953 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 CEP295Q9C0D2 2601 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 A0A087X0B3 334 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 RNF40O75150 1001 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 CSH1P0DML2 217 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 CSH2P0DML3 217 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 TXLNAP40222 546 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 PNPLA4P41247 253 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 STAT6P42226 847 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 MYL7Q01449 175 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 SMARCB1Q12824 385 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 GRSF1Q12849 480 aaKnown RBP eCLIP13.58□□□□□ -0.24
SKA1-205ENST00000494518 SF3A2Q15428 464 aaKnown RBP13.58□□□□□ -0.24
SKA1-205ENST00000494518 NFE2Q16621 373 aaPredicted RBP13.58□□□□□ -0.24
SKA1-205ENST00000494518 TMEM196Q5HYL7 178 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 PPM1JQ5JR12 505 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 INTS6LQ5JSJ4 861 aaKnown RBP13.58□□□□□ -0.24
SKA1-205ENST00000494518 CC2D1AQ6P1N0 951 aaPredicted RBP13.58□□□□□ -0.24
SKA1-205ENST00000494518 WDR5BQ86VZ2 330 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 NT5DC4Q86YG4 428 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 GLIS3Q8NEA6 775 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 NETO1Q8TDF5 533 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 HPS3Q969F9 1004 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 PHF12Q96QT6 1004 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 HHIPQ96QV1 700 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 SLC22A12Q96S37 553 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 CYP2S1Q96SQ9 504 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 ARRDC1-AS1Q9H2J1 176 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 SMOC1Q9H4F8 434 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 TDP1Q9NUW8 608 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 SEL1LQ9UBV2 794 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 SIX4Q9UIU6 781 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 SRPRBQ9Y5M8 271 aaKnown RBP13.58□□□□□ -0.24
SKA1-205ENST00000494518 PTPRJQ12913 1337 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 MYH10P35580 1976 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 USP24Q9UPU5 2620 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 GON4LQ3T8J9 2241 aa13.58□□□□□ -0.24
SKA1-205ENST00000494518 MYO18AQ92614 2054 aaKnown RBP13.57□□□□□ -0.24
SKA1-205ENST00000494518 SLC30A4O14863 429 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 LRP3O75074 770 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 ATP2C2O75185 946 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 RPP40O75818 363 aaKnown RBP13.57□□□□□ -0.24
SKA1-205ENST00000494518 CKMP06732 381 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 TMEM191BP0C7N4 346 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 CCDC192P0DO97 292 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 DDX6P26196 483 aaKnown RBP eCLIP13.57□□□□□ -0.24
SKA1-205ENST00000494518 CNR2P34972 360 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 PSMC1P62191 440 aaKnown RBP13.57□□□□□ -0.24
SKA1-205ENST00000494518 MTF1Q14872 753 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 CSRP2Q16527 193 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 KBTBD6Q86V97 674 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 MON1AQ86VX9 555 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 SPATA2LQ8IUW3 424 aaPredicted RBP13.57□□□□□ -0.24
SKA1-205ENST00000494518 ADGRF2Q8IZF7 708 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 SYNPOQ8N3V7 929 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 PDILTQ8N807 584 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 CXorf38Q8TB03 319 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 CACTINQ8WUQ7 758 aaKnown RBP13.57□□□□□ -0.24
SKA1-205ENST00000494518 USP28Q96RU2 1077 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 PKMYT1Q99640 499 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 KIF9Q9HAQ2 790 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 PANK4Q9NVE7 773 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 SLC8A2Q9UPR5 921 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 PCDHB13Q9Y5F0 798 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 WNT6Q9Y6F9 365 aa13.57□□□□□ -0.24
SKA1-205ENST00000494518 NOL4O94818 638 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 GARTP22102 1010 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 GALK1P51570 392 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 RPL10AP62906 217 aaKnown RBP13.56□□□□□ -0.24
SKA1-205ENST00000494518 POU5F1Q01860 360 aaKnown RBP13.56□□□□□ -0.24
SKA1-205ENST00000494518 PSMD2Q13200 908 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 CUL4AQ13619 759 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 AASDHQ4L235 1098 aaPredicted RBP13.56□□□□□ -0.24
SKA1-205ENST00000494518 CCDC73Q6ZRK6 1079 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 ARL14EPQ8N8R7 260 aaPredicted RBP13.56□□□□□ -0.24
SKA1-205ENST00000494518 OR5B17Q8NGF7 314 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 RPLP0P6Q8NHW5 317 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 LEO1Q8WVC0 666 aaPredicted RBP13.56□□□□□ -0.24
SKA1-205ENST00000494518 GAB3Q8WWW8 586 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 ACBD6Q9BR61 282 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 RXFP3Q9NSD7 469 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 DUS2Q9NX74 493 aaKnown RBP13.56□□□□□ -0.24
SKA1-205ENST00000494518 ITGA11Q9UKX5 1188 aa13.56□□□□□ -0.24
SKA1-205ENST00000494518 TRAV19A0A0A6YYK7 116 aa13.55□□□□□ -0.24
SKA1-205ENST00000494518 C2orf78A6NCI8 922 aa13.55□□□□□ -0.24
SKA1-205ENST00000494518 TRDMT1O14717 391 aaKnown RBP13.55□□□□□ -0.24
SKA1-205ENST00000494518 KRT37O76014 449 aa13.55□□□□□ -0.24
SKA1-205ENST00000494518 LDHAP00338 332 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms