RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 RALAP11233 206 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 DARSP14868 501 aaKnown RBP11.33□□□□□ -0.6
USP4-214ENST00000491791 ELNP15502 786 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 NR1D1P20393 614 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 CYP3A5P20815 502 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 KLRC2P26717 231 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 RPL34P49207 117 aaKnown RBP11.33□□□□□ -0.6
USP4-214ENST00000491791 OSTNP61366 133 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 OGDHQ02218 1023 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 SLC25A11Q02978 314 aaKnown RBP11.33□□□□□ -0.6
USP4-214ENST00000491791 KRT17Q04695 432 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 CALCOCO2Q13137 446 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 CCDC142Q17RM4 750 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 TMEM132AQ24JP5 1023 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 PTPN20Q4JDL3 420 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 PKDCCQ504Y2 493 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 MFSD5Q6N075 450 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 LLGL2Q6P1M3 1020 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 SPOCD1Q6ZMY3 1216 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 ADAT2Q7Z6V5 191 aaKnown RBP11.33□□□□□ -0.6
USP4-214ENST00000491791 HOOK3Q86VS8 718 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 UNC93AQ86WB7 457 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 VSIG1Q86XK7 387 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 XYLT1Q86Y38 959 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 CCDC89Q8N998 374 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 UBLCP1Q8WVY7 318 aaPredicted RBP11.33□□□□□ -0.6
USP4-214ENST00000491791 C1orf54Q8WWF1 131 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 NLRP7Q8WX94 980 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 CENPTQ96BT3 561 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 ZBTB10Q96DT7 871 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 SNX27Q96L92 541 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 DEFB118Q96PH6 123 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 NCAPGQ9BPX3 1015 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 PHACTR1Q9C0D0 580 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 PLEKHA4Q9H4M7 779 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 CYLDQ9NQC7 956 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 CHST7Q9NS84 486 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 CWC15Q9P013 229 aaKnown RBP11.33□□□□□ -0.6
USP4-214ENST00000491791 NXF1Q9UBU9 619 aaKnown RBP11.33□□□□□ -0.6
USP4-214ENST00000491791 CYTH4Q9UIA0 394 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 AGAP1Q9UPQ3 857 aa11.33□□□□□ -0.6
USP4-214ENST00000491791 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.33□□□□□ -0.6
USP4-214ENST00000491791 hCG_1818297A0A087WSY0 165 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 C3orf70A6NLC5 250 aaPredicted RBP11.32□□□□□ -0.6
USP4-214ENST00000491791 KPNA6O60684 536 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 MICAL2O94851 1124 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 ENDOD1O94919 500 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 KRT19P08727 400 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 KRT3P12035 628 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 KCNE1P15382 129 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 PCK1P35558 622 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 SCNN1AP37088 669 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 MDH1P40925 334 aaKnown RBP11.32□□□□□ -0.6
USP4-214ENST00000491791 CDKN2BP42772 138 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 KCNJ1P48048 391 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 CPT1AP50416 773 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 HNRNPH2P55795 449 aaKnown RBP11.32□□□□□ -0.6
USP4-214ENST00000491791 ADCY2Q08462 1091 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 MYO1EQ12965 1108 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 PPP1R7Q15435 360 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 C2CD6Q53TS8 623 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 C6orf118Q5T5N4 469 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 ARHGAP17Q68EM7 881 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 NOTUMQ6P988 496 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 DCUN1D2Q6PH85 259 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 ARCQ7LC44 396 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 NECAB2Q7Z6G3 386 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 CDR2LQ86X02 465 aaPredicted RBP11.32□□□□□ -0.6
USP4-214ENST00000491791 CMASQ8NFW8 434 aaPredicted RBP11.32□□□□□ -0.6
USP4-214ENST00000491791 IPO4Q8TEX9 1081 aaKnown RBP11.32□□□□□ -0.6
USP4-214ENST00000491791 RNF25Q96BH1 459 aaPredicted RBP11.32□□□□□ -0.6
USP4-214ENST00000491791 CPB2Q96IY4 423 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 MCEEQ96PE7 176 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 TWNKQ96RR1 684 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 TRAIPQ9BWF2 469 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 AAASQ9NRG9 546 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 SLC12A6Q9UHW9 1150 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 GJD2Q9UKL4 321 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 ATP8A1Q9Y2Q0 1164 aa11.32□□□□□ -0.6
USP4-214ENST00000491791 PDCD11Q14690 1871 aaKnown RBP11.32□□□□□ -0.6
USP4-214ENST00000491791 ZNF487B1APH4 448 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 F8VP50 259 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 PIRO00625 290 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 DPYSL4O14531 572 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 RIPK2O43353 540 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 LIASO43766 372 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 ITGAVP06756 1048 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 RFC1P35251 1148 aaPredicted RBP11.31□□□□□ -0.6
USP4-214ENST00000491791 PSEN2P49810 448 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 CDH8P55286 799 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 PDCLQ13371 301 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 MFSD10Q14728 455 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 OASLQ15646 514 aaKnown RBP11.31□□□□□ -0.6
USP4-214ENST00000491791 HADHQ16836 314 aaKnown RBP11.31□□□□□ -0.6
USP4-214ENST00000491791 TFDP3Q5H9I0 405 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 DENND2CQ68D51 928 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 MFSD7Q6UXD7 560 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 ANKS1BQ7Z6G8 1248 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 ZDHHC17Q8IUH5 632 aa11.31□□□□□ -0.6
USP4-214ENST00000491791 ARFGAP1Q8N6T3 406 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms