RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CXorf57Q6NSI4 855 aaKnown RBP2.71□□□□□ -1.98
HMGB1-208ENST00000490788 OLFML1Q6UWY5 402 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 Q6ZPA2 131 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 LNX2Q8N448 690 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 FAM46DQ8NEK8 389 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 GPR150Q8NGU9 434 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 SLC30A5Q8TAD4 765 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 NELL1Q92832 810 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 FUBP1Q96AE4 644 aaKnown RBP2.71□□□□□ -1.98
HMGB1-208ENST00000490788 AGAP2Q99490 1192 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 TTYH3Q9C0H2 523 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 FAM204AQ9H8W3 233 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 GPR35Q9HC97 309 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 ZSCAN32Q9NX65 697 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 SYBUQ9NX95 663 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 CTTNBP2NLQ9P2B4 639 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 G3BP2Q9UN86 482 aaKnown RBP2.71□□□□□ -1.98
HMGB1-208ENST00000490788 PLEKHM1Q9Y4G2 1056 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 EID1Q9Y6B2 187 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 COL4A3Q01955 1670 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 CHD4Q14839 1912 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 ABCA9Q8IUA7 1624 aa2.71□□□□□ -1.98
HMGB1-208ENST00000490788 SPATA31A3Q5VYP0 1347 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 E9PLN8 166 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 ERC2O15083 957 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 MPPED1O15442 326 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 UBXN7O94888 489 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 UNC5CO95185 931 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 MATN4O95460 622 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 GRPP07492 148 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 XRCC6P12956 609 aaKnown RBP eCLIP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 PPP3CBP16298 524 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 GATA3P23771 443 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 PLA2G5P39877 138 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 MPLP40238 635 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 GCLCP48506 637 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 ATXN1P54253 815 aaKnown RBP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 KRTAP10-9P60411 292 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 RAB1AP62820 205 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 NKX6-1P78426 367 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 GPSM2P81274 684 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 FOXI1Q12951 378 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 ZNF169Q14929 603 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 IQCB1Q15051 598 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 LONRF3Q496Y0 759 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 PLAC9Q5JTB6 97 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 TEDDM1Q5T9Z0 273 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 SFRP4Q6FHJ7 346 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 TAF2Q6P1X5 1199 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 VWA1Q6PCB0 445 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 ZNF783Q6ZMS7 281 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 GRASPQ7Z6J2 395 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 ZNF575Q86XF7 245 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 PPP1R3BQ86XI6 285 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 SLC35G2Q8TBE7 412 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 POC1BQ8TC44 478 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 NELL2Q99435 816 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 ACO2Q99798 780 aaKnown RBP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 VKORC1Q9BQB6 163 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 RTFDC1Q9BY42 306 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 ACTRT3Q9BYD9 372 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 SLC12A5Q9H2X9 1139 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 C1orf112Q9NSG2 853 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 SLC17A6Q9P2U8 582 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 STAP2Q9UGK3 403 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 SHOC2Q9UQ13 582 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 TMX2Q9Y320 296 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 COL16A1Q07092 1604 aaPredicted RBP2.7□□□□□ -1.98
HMGB1-208ENST00000490788 TMEM94Q12767 1356 aa2.7□□□□□ -1.98
HMGB1-208ENST00000490788 STRCP1A6NGW2 1772 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 WRNQ14191 1432 aaPredicted RBP eCLIP2.69□□□□□ -1.98
HMGB1-208ENST00000490788 CAPN8A6NHC0 703 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 TBC1D4O60343 1298 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 NXPH3O95157 252 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 ZFPL1O95159 310 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 TTLL1O95922 423 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 SCGB1D2O95969 90 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 THP07101 528 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 ATXN1LP0C7T5 689 aaKnown RBP2.69□□□□□ -1.98
HMGB1-208ENST00000490788 MYBP10242 640 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 PIM1P11309 404 aaPredicted RBP2.69□□□□□ -1.98
HMGB1-208ENST00000490788 CYP2C9P11712 490 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 HDCP19113 662 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 LPOP22079 712 aaPredicted RBP2.69□□□□□ -1.98
HMGB1-208ENST00000490788 PROZP22891 400 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 ADRA1BP35368 520 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 PXNP49023 591 aaPredicted RBP2.69□□□□□ -1.98
HMGB1-208ENST00000490788 ELLP55199 621 aaPredicted RBP2.69□□□□□ -1.98
HMGB1-208ENST00000490788 NANOS3P60323 173 aaKnown RBP2.69□□□□□ -1.98
HMGB1-208ENST00000490788 KRT17Q04695 432 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 SCAPQ12770 1279 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 MLC1Q15049 377 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 PTPRRQ15256 657 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 ANO6Q4KMQ2 910 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 PRR16Q569H4 304 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 RBM20Q5T481 1227 aaKnown RBP2.69□□□□□ -1.98
HMGB1-208ENST00000490788 FAM102BQ5T8I3 360 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 EMC10Q5UCC4 262 aa2.69□□□□□ -1.98
HMGB1-208ENST00000490788 LMBRD2Q68DH5 695 aaPredicted RBP2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms