RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 TTC9BQ8N6N2 239 aa11.57□□□□□ -0.56
VPS13D-210ENST00000489961 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.57□□□□□ -0.56
VPS13D-210ENST00000489961 WHAMMQ8TF30 809 aa11.57□□□□□ -0.56
VPS13D-210ENST00000489961 KAT5Q92993 513 aa11.57□□□□□ -0.56
VPS13D-210ENST00000489961 ZNF512Q96ME7 567 aaPredicted RBP11.57□□□□□ -0.56
VPS13D-210ENST00000489961 PCMTD1Q96MG8 357 aaPredicted RBP11.57□□□□□ -0.56
VPS13D-210ENST00000489961 NECTIN4Q96NY8 510 aa11.57□□□□□ -0.56
VPS13D-210ENST00000489961 TWNKQ96RR1 684 aa11.57□□□□□ -0.56
VPS13D-210ENST00000489961 MED10Q9BTT4 135 aa11.57□□□□□ -0.56
VPS13D-210ENST00000489961 LSM14BQ9BX40 385 aaKnown RBP11.57□□□□□ -0.56
VPS13D-210ENST00000489961 ELOVL4Q9GZR5 314 aa11.57□□□□□ -0.56
VPS13D-210ENST00000489961 CRISPLD1Q9H336 500 aa11.57□□□□□ -0.56
VPS13D-210ENST00000489961 USP15Q9Y4E8 981 aaPredicted RBP11.57□□□□□ -0.56
VPS13D-210ENST00000489961 PCDHB4Q9Y5E5 795 aa11.57□□□□□ -0.56
VPS13D-210ENST00000489961 C2orf16Q68DN1 1984 aa11.57□□□□□ -0.56
VPS13D-210ENST00000489961 KRT5P13647 590 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 RFX1P22670 979 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 BDNFP23560 247 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 CYP2F1P24903 491 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 RAD23BP54727 409 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 CBX2Q14781 532 aaPredicted RBP11.56□□□□□ -0.56
VPS13D-210ENST00000489961 CCDC142Q17RM4 750 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 SMYD5Q6GMV2 418 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 IQCEQ6IPM2 695 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 GJB7Q6PEY0 223 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 TMEM270Q6UE05 265 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 ITIH5Q86UX2 942 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 SCN4BQ8IWT1 228 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 UBR7Q8N806 425 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 SLC4A11Q8NBS3 891 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 RNF214Q8ND24 703 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 ZNF707Q96C28 371 aaPredicted RBP11.56□□□□□ -0.56
VPS13D-210ENST00000489961 HEXIM2Q96MH2 286 aaKnown RBP11.56□□□□□ -0.56
VPS13D-210ENST00000489961 KREMEN1Q96MU8 473 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 LPIN3Q9BQK8 851 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 B3GNT5Q9BYG0 378 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 SIX2Q9NPC8 291 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 PLCB1Q9NQ66 1216 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 BRWD1Q9NSI6 2320 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 FAM49BQ9NUQ9 324 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 KIAA1257Q9ULG3 409 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 ASB3Q9Y575 518 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 MYH10P35580 1976 aa11.56□□□□□ -0.56
VPS13D-210ENST00000489961 GRXCR2A6NFK2 248 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 CLDN5O00501 218 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 TRIM66O15016 1216 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 SOAT2O75908 522 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 PAEPP09466 180 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 CCDC130P13994 396 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 CD19P15391 556 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 PTPN2P17706 415 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 ACO1P21399 889 aaKnown RBP11.55□□□□□ -0.56
VPS13D-210ENST00000489961 ANXA13P27216 316 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 GRIK1P39086 918 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 FANCCQ00597 558 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 APBA1Q02410 837 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 SYCP1Q15431 976 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 TAF12Q16514 161 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 ARHGAP44Q17R89 818 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 KLHDC7AQ5VTJ3 777 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 FAM35AQ86V20 835 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.55□□□□□ -0.56
VPS13D-210ENST00000489961 C12orf29Q8N999 325 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 RBBP8NLQ8NC74 664 aaPredicted RBP11.55□□□□□ -0.56
VPS13D-210ENST00000489961 NEK11Q8NG66 645 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 SLC2A14Q8TDB8 520 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 SUSD6Q92537 303 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 CYFIP2Q96F07 1278 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 SMARCD1Q96GM5 515 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 CEP295NLQ96MC4 621 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 ERGIC2Q96RQ1 377 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 HNRNPABQ99729 332 aaKnown RBP11.55□□□□□ -0.56
VPS13D-210ENST00000489961 ZNF518BQ9C0D4 1074 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 RTN4Q9NQC3 1192 aaKnown RBP11.55□□□□□ -0.56
VPS13D-210ENST00000489961 DNAJC12Q9UKB3 198 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 DAAM1Q9Y4D1 1078 aa11.55□□□□□ -0.56
VPS13D-210ENST00000489961 A0A1B0GTH6 734 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 AP1G2O75843 785 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 SLC34A2O95436 690 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 FAM200BP0CF97 657 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 CSH1P0DML2 217 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 CSH2P0DML3 217 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 VDRP11473 427 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 UCHL3P15374 230 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 ATF6P18850 670 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 ADORA2BP29275 332 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 USP8P40818 1118 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 KCNQ1P51787 676 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 UBASH3AP57075 661 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 RAPGEF1Q13905 1077 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 SMAD2Q15796 467 aaKnown RBP11.54□□□□□ -0.56
VPS13D-210ENST00000489961 DDR2Q16832 855 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 PABPC1LQ4VXU2 614 aaKnown RBP11.54□□□□□ -0.56
VPS13D-210ENST00000489961 SGO2Q562F6 1265 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 PPP1R26Q5T8A7 1209 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-210ENST00000489961 CYP4A22Q5TCH4 519 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 ARHGAP17Q68EM7 881 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 GRASPQ7Z6J2 395 aaPredicted RBP11.54□□□□□ -0.56
VPS13D-210ENST00000489961 FUKQ8N0W3 1084 aa11.54□□□□□ -0.56
VPS13D-210ENST00000489961 LEMD2Q8NC56 503 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms