RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 DPP9Q86TI2 863 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 ZNF280BQ86YH2 543 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 VRK3Q8IV63 474 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.51□□□□□ -1.37
USP48-209ENST00000487880 AMER2Q8N7J2 671 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 PARD3BQ8TEW8 1205 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 RAPGEF4Q8WZA2 1011 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 LPIN2Q92539 896 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 Q96MF0 132 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 COQ10AQ96MF6 247 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 AMBRA1Q9C0C7 1298 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 CHST8Q9H2A9 424 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 SSX2IPQ9Y2D8 614 aa6.51□□□□□ -1.37
USP48-209ENST00000487880 POM121BA6NF01 834 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 MT-ND5P03915 603 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 PARP1P09874 1014 aaKnown RBP6.5□□□□□ -1.37
USP48-209ENST00000487880 KRT4P19013 534 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 ACVRL1P37023 503 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 DGKEP52429 567 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 ZXDAP98168 799 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 MYO1EQ12965 1108 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 HDAC1Q13547 482 aaPredicted RBP6.5□□□□□ -1.37
USP48-209ENST00000487880 MGAT5BQ3V5L5 792 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 KIAA0895LQ68EN5 471 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 SFRP4Q6FHJ7 346 aaPredicted RBP6.5□□□□□ -1.37
USP48-209ENST00000487880 ZDHHC24Q6UX98 284 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 UNC13DQ70J99 1090 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 MYCBPAPQ8TBZ2 947 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 GJA10Q969M2 543 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 FAM136AQ96C01 138 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 SNX22Q96L94 193 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 DHX36Q9H2U1 1008 aaKnown RBP6.5□□□□□ -1.37
USP48-209ENST00000487880 CXorf36Q9H7Y0 433 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 CASS4Q9NQ75 786 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 STARD7Q9NQZ5 370 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 TESQ9UGI8 421 aaKnown RBP6.5□□□□□ -1.37
USP48-209ENST00000487880 NDRG4Q9ULP0 352 aaKnown RBP6.5□□□□□ -1.37
USP48-209ENST00000487880 PADI4Q9UM07 663 aa6.5□□□□□ -1.37
USP48-209ENST00000487880 LOC102723971A0A1B0GUV8 181 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 A0A1W2PPC4 97 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 CCP110O43303 1012 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 KCNA3P22001 575 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 STT3AP46977 705 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 CARSP49589 748 aaKnown RBP6.49□□□□□ -1.37
USP48-209ENST00000487880 ITIH3Q06033 890 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 NPY5RQ15761 445 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 ICE2Q659A1 982 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 OR2C3Q8N628 320 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 PPP1R9BQ96SB3 815 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 ELAC2Q9BQ52 826 aaKnown RBP6.49□□□□□ -1.37
USP48-209ENST00000487880 AIFM2Q9BRQ8 373 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 STK31Q9BXU1 1019 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 SERHLQ9NQF3 203 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 TBC1D30Q9Y2I9 924 aa6.49□□□□□ -1.37
USP48-209ENST00000487880 WDR27A2RRH5 827 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 hCG_1984214I3L0E3 225 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 CSF1RP07333 972 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 ANXA2P07355 339 aaKnown RBP6.48□□□□□ -1.37
USP48-209ENST00000487880 HKR1P10072 659 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 NXPH1P58417 271 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 SATB1Q01826 763 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 KRT17Q04695 432 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 ARHGAP40Q5TG30 622 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 FCRL6Q6DN72 434 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 RGS7BPQ6MZT1 257 aaPredicted RBP6.48□□□□□ -1.37
USP48-209ENST00000487880 Q6ZNX1 250 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 LIX1LQ8IVB5 337 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 LCORLQ8N3X6 602 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 ATP11CQ8NB49 1132 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 BEND2Q8NDZ0 799 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 RIPOR3Q96MK2 946 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 PRRX2Q99811 253 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 MYD88Q99836 296 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 ACTRT3Q9BYD9 372 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 TPSD1Q9BZJ3 242 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 FNIP2Q9P278 1114 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 DNMT3BQ9UBC3 853 aaKnown RBP6.48□□□□□ -1.37
USP48-209ENST00000487880 DMTF1Q9Y222 760 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 MRPS17Q9Y2R5 130 aaKnown RBP6.48□□□□□ -1.37
USP48-209ENST00000487880 HS3ST3A1Q9Y663 406 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 CDY1Q9Y6F8 540 aa6.48□□□□□ -1.37
USP48-209ENST00000487880 EPN1Q9Y6I3 576 aaPredicted RBP6.48□□□□□ -1.37
USP48-209ENST00000487880 CLCA1A8K7I4 914 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 YY2O15391 372 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 RASSF9O75901 435 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 ESRRBO95718 433 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 IFIT2P09913 472 aaKnown RBP6.47□□□□□ -1.37
USP48-209ENST00000487880 TNFSF4P23510 183 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 ACVR2AP27037 513 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 HTR3AP46098 478 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 AVPR1BP47901 424 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 SEC24CP53992 1094 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 INSCQ1MX18 579 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 KLHDC7AQ5VTJ3 777 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 SDR16C5Q8N3Y7 309 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 B3GALNT2Q8NCR0 500 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 BPIFB1Q8TDL5 484 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 NEU4Q8WWR8 484 aaPredicted RBP6.47□□□□□ -1.37
USP48-209ENST00000487880 IQCDQ96DY2 449 aa6.47□□□□□ -1.37
USP48-209ENST00000487880 PGBD1Q96JS3 809 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms