RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 ZMYM2Q9UBW7 1377 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 N4BP2Q86UW6 1770 aaPredicted RBP13.86□□□□□ -0.19
HMGN1-216ENST00000486741 A0A1B0GUA9 196 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 CENPCQ03188 943 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 C1QBPQ07021 282 aaKnown RBP13.86□□□□□ -0.19
HMGN1-216ENST00000486741 LRRC34Q8IZ02 419 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 USP33Q8TEY7 942 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 ACO2Q99798 780 aaKnown RBP13.86□□□□□ -0.19
HMGN1-216ENST00000486741 VPS11Q9H270 941 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 SNCAIPQ9Y6H5 919 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 A0A0B4J269 797 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 YY1P25490 414 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 AARSP49588 968 aaKnown RBP eCLIP13.86□□□□□ -0.19
HMGN1-216ENST00000486741 SLC26A2P50443 739 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 ARL13BQ3SXY8 428 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 SDCCAG8Q86SQ7 713 aaPredicted RBP13.86□□□□□ -0.19
HMGN1-216ENST00000486741 EXD1Q8NHP7 514 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.86□□□□□ -0.19
HMGN1-216ENST00000486741 PPP4R1Q8TF05 950 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 FAM172AQ8WUF8 416 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 ARHGAP28Q9P2N2 729 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 CTNNAL1Q9UBT7 734 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 USP18Q9UMW8 372 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 PCK1P35558 622 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 ACTN3Q08043 901 aaPredicted RBP13.86□□□□□ -0.19
HMGN1-216ENST00000486741 EFHC2Q5JST6 749 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 SYDE1Q6ZW31 735 aaPredicted RBP13.86□□□□□ -0.19
HMGN1-216ENST00000486741 BTAF1O14981 1849 aa13.86□□□□□ -0.19
HMGN1-216ENST00000486741 C12orf29Q8N999 325 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 CEP41Q9BYV8 373 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 PIH1D1Q9NWS0 290 aaKnown RBP13.85□□□□□ -0.19
HMGN1-216ENST00000486741 CPSF2Q9P2I0 782 aaKnown RBP13.85□□□□□ -0.19
HMGN1-216ENST00000486741 MYH1P12882 1939 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 LPXNO60711 386 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 FAM107AO95990 144 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 VDRP11473 427 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 DNAJC3Q13217 504 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 C15orf59Q2T9L4 293 aaPredicted RBP13.85□□□□□ -0.19
HMGN1-216ENST00000486741 C12orf56Q8IXR9 622 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 SLC7A14Q8TBB6 771 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 RSAD1Q9HA92 442 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 RRAGCQ9HB90 399 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 ZC3H7BQ9UGR2 993 aaKnown RBP13.85□□□□□ -0.19
HMGN1-216ENST00000486741 PEX19P40855 299 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 SNCBQ16143 134 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 LCMT1Q9UIC8 334 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 NCANO14594 1321 aa13.85□□□□□ -0.19
HMGN1-216ENST00000486741 MICAL2O94851 1124 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 CYP1A2P05177 515 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 ACO1P21399 889 aaKnown RBP13.84□□□□□ -0.19
HMGN1-216ENST00000486741 NOMO3P69849 1222 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 CCNG2Q16589 344 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 TRIM68Q6AZZ1 485 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 MCUQ8NE86 351 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 PGBD4Q96DM1 585 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 GPR20Q99678 358 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.84□□□□□ -0.19
HMGN1-216ENST00000486741 LRFN2Q9ULH4 789 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 RRN3P2A6NIE6 340 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 E5RJQ4 531 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 CES2O00748 559 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 DDX3YO15523 660 aaKnown RBP13.84□□□□□ -0.19
HMGN1-216ENST00000486741 RIPK2O43353 540 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 B3GAT3O94766 335 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 STAMBPO95630 424 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 CHRNB2P17787 502 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 RASSF2P50749 326 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 KLHL38Q2WGJ6 581 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 AGR3Q8TD06 166 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 PPP1R12CQ9BZL4 782 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 DHX33Q9H6R0 707 aaKnown RBP13.84□□□□□ -0.19
HMGN1-216ENST00000486741 COL4A1P02462 1669 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 BTNL10A8MVZ5 291 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 CIB2O75838 187 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 ACVR2BQ13705 512 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 PRPSAP1Q14558 356 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 KYAT1Q16773 422 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 KIAA1841Q6NSI8 718 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 TTC39CQ8N584 583 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 TMEM134Q9H6X4 195 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 MARCOQ9UEW3 520 aaPredicted RBP13.84□□□□□ -0.19
HMGN1-216ENST00000486741 R3HDM2Q9Y2K5 976 aaKnown RBP13.84□□□□□ -0.19
HMGN1-216ENST00000486741 H0Y3Z8 333 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 TAF6P49848 677 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 PPIL2Q13356 520 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 MFSD14CQ5VZR4 134 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 NETO2Q8NC67 525 aa13.84□□□□□ -0.19
HMGN1-216ENST00000486741 APOBEC3GQ9HC16 384 aaKnown RBP13.84□□□□□ -0.19
HMGN1-216ENST00000486741 FZD9O00144 591 aa13.83□□□□□ -0.2
HMGN1-216ENST00000486741 MAPK13O15264 365 aa13.83□□□□□ -0.2
HMGN1-216ENST00000486741 TTC4O95801 387 aa13.83□□□□□ -0.2
HMGN1-216ENST00000486741 PECAM1P16284 738 aaPredicted RBP13.83□□□□□ -0.2
HMGN1-216ENST00000486741 KCNA3P22001 575 aa13.83□□□□□ -0.2
HMGN1-216ENST00000486741 MIPP30301 263 aa13.83□□□□□ -0.2
HMGN1-216ENST00000486741 DEUP1Q05D60 604 aa13.83□□□□□ -0.2
HMGN1-216ENST00000486741 ZNF516Q92618 1163 aa13.83□□□□□ -0.2
HMGN1-216ENST00000486741 CYTH2Q99418 400 aa13.83□□□□□ -0.2
HMGN1-216ENST00000486741 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.83□□□□□ -0.2
HMGN1-216ENST00000486741 UBQLN1Q9UMX0 589 aaKnown RBP13.83□□□□□ -0.2
HMGN1-216ENST00000486741 PRG3Q9Y2Y8 225 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms