RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 ITGA2BP08514 1039 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 PABPC4LP0CB38 370 aaKnown RBP19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 AQP5P55064 265 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 FAAP100Q0VG06 881 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 GRAMD1BQ3KR37 738 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 LENG1Q96BZ8 264 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 SLC13A1Q9BZW2 595 aa19.67■□□□□ 0.74
CCDC88B-207ENST00000479965 GDF11O95390 407 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 INHBAP08476 426 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 PEX2P28328 305 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 DSG3P32926 999 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 NFIAQ12857 509 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 TMED1Q13445 227 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 TRIP10Q15642 601 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 NCAPG2Q86XI2 1143 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 CTAGE3PQ8IX95 158 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 SNRNP27Q8WVK2 155 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 ALKBH8Q96BT7 664 aaKnown RBP19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 CYP4F11Q9HBI6 524 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 PICK1Q9NRD5 415 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 TAGLN3Q9UI15 199 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 GGA1Q9UJY5 639 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 GAKO14976 1311 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 PDE5AO76074 875 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 NCOA4Q13772 614 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 SV2AQ7L0J3 742 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 ZFPM1Q8IX07 1006 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 POU5F2Q8N7G0 328 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 STKLD1Q8NE28 680 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 DCAKDQ8WVC6 231 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 AVENQ9NQS1 362 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 SHOC2Q9UQ13 582 aa19.66■□□□□ 0.74
CCDC88B-207ENST00000479965 MYPNQ86TC9 1320 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 SORBS2O94875 1100 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 IMPDH2P12268 514 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 RPL7AP62424 266 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 MYBPC2Q14324 1141 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 HIC1Q14526 733 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 DHDDSQ86SQ9 333 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 EFCAB3Q8N7B9 438 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 FAM163AQ96GL9 167 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 AGBL1Q96MI9 1066 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 ACSS3Q9H6R3 686 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 SSU72Q9NP77 194 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 IVNS1ABPQ9Y6Y0 642 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 LAMB2P55268 1798 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 NHSQ6T4R5 1651 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 GNPATO15228 680 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 TGDSO95455 350 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 VCLP18206 1134 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 MAMLD1Q13495 774 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 DNAL1Q4LDG9 190 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 LARGE2Q8N3Y3 721 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 STRA6Q9BX79 667 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 PDLIM1O00151 329 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 COPEO14579 308 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 ATP6V1G1O75348 118 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 PENKP01210 267 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 ATP6V1B1P15313 513 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 YWHAGP61981 247 aaKnown RBP eCLIP19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 IRX4P78413 519 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 BASP1P80723 227 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 PDE1BQ01064 536 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 ZYXQ15942 572 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 PDSS2Q86YH6 399 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 GDPD5Q8WTR4 605 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 SLITRK1Q96PX8 696 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 PLEKHG4BQ96PX9 1271 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 PPCSQ9HAB8 311 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 TMEM8AQ9HCN3 771 aa19.65■□□□□ 0.74
CCDC88B-207ENST00000479965 TCRBV7S3A2A0A539 114 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 BUD23O43709 281 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 FAM155BO75949 473 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 DESP17661 470 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 MAP3K10Q02779 954 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 BST1Q10588 318 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 PDK3Q15120 406 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 TXNRD3NBQ6F5E7 133 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 RBM44Q6ZP01 1051 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 DCAF4Q8WV16 495 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 TRIM11Q96F44 468 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 S100A14Q9HCY8 104 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 C1orf112Q9NSG2 853 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 IQANK1A0A1B0GTG1 560 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 UQCRBP14927 111 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 VCPP55072 806 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 GDF10P55107 478 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 DLGAP5Q15398 846 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 SH2D4BQ5SQS7 431 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 MEX3CQ5U5Q3 659 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 CDHR3Q6ZTQ4 885 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 CEP70Q8NHQ1 597 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 MZB1Q8WU39 189 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 MKL1Q969V6 931 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 APOPT1Q96IL0 206 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 GCNAQ96QF7 691 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 CCDC28BQ9BUN5 200 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 MRPL47Q9HD33 250 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 SERPINA10Q9UK55 444 aa19.64■□□□□ 0.73
CCDC88B-207ENST00000479965 PLA2G4CQ9UP65 541 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms