RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 MCL1Q07820 350 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 NCOA4Q13772 614 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 CCNG2Q16589 344 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 USP13Q92995 863 aaPredicted RBP14.11□□□□□ -0.15
USP42-206ENST00000479544 SGF29Q96ES7 293 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 TARS2Q9BW92 718 aaKnown RBP14.11□□□□□ -0.15
USP42-206ENST00000479544 TMEM8AQ9HCN3 771 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 PCYOX1Q9UHG3 505 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 SLC4A1P02730 911 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 PROCP04070 461 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 FOXN2P32314 431 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 ARL4AP40617 200 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 NLRP11P59045 1033 aaKnown RBP14.11□□□□□ -0.15
USP42-206ENST00000479544 PPP4CP60510 307 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 SLC44A4Q53GD3 710 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 POLNQ7Z5Q5 900 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 PPIL6Q8IXY8 311 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 RFWD2Q8NHY2 731 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 ETNPPLQ8TBG4 499 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 ART4Q93070 314 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 OXNAD1Q96HP4 312 aaPredicted RBP14.11□□□□□ -0.15
USP42-206ENST00000479544 CCDC90BQ9GZT6 254 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 PICK1Q9NRD5 415 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 KCNH7Q9NS40 1196 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 CHCHD3Q9NX63 227 aaKnown RBP14.11□□□□□ -0.15
USP42-206ENST00000479544 PAIP2BQ9ULR5 123 aaKnown RBP14.11□□□□□ -0.15
USP42-206ENST00000479544 IVNS1ABPQ9Y6Y0 642 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 V9GYQ6 96 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 CACNA1FO60840 1977 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 KCNA4P22459 653 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 PPP1R15BQ5SWA1 713 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 C16orf46Q6P387 395 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 ALYREFQ86V81 257 aaKnown RBP14.11□□□□□ -0.15
USP42-206ENST00000479544 FAM228AQ86W67 206 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 MECRQ9BV79 373 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 UNKQ9C0B0 810 aaKnown RBP14.11□□□□□ -0.15
USP42-206ENST00000479544 IL1RL2Q9HB29 575 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 GPATCH2LQ9NWQ4 482 aa14.11□□□□□ -0.15
USP42-206ENST00000479544 PIK3C2AO00443 1686 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 TTC36A6NLP5 189 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 TBX3O15119 743 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 PROSCO94903 275 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 SLITRK3O94933 977 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 MMP10P09238 476 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 P4HA1P13674 534 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 PDGFRAP16234 1089 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 SP100P23497 879 aaPredicted RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 FLOT2Q14254 428 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 EFTUD2Q15029 972 aaKnown RBP eCLIP14.1□□□□□ -0.15
USP42-206ENST00000479544 ACBD5Q5T8D3 534 aaPredicted RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 LRRC8EQ6NSJ5 796 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 RSBN1LQ6PCB5 846 aaPredicted RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 AGBL1Q96MI9 1066 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 PRPF18Q99633 342 aaKnown RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 RTFDC1Q9BY42 306 aaPredicted RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 GRIP2Q9C0E4 1043 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 SLC17A7Q9P2U7 560 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 TGFB1I1O43294 461 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 MAPK10P53779 464 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 SNX16P57768 344 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 PSMC5P62195 406 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 RNF43Q68DV7 783 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 UPF3AQ9H1J1 476 aaKnown RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 KLHL8Q9P2G9 620 aaPredicted RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 CHKBQ9Y259 395 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 WASF2Q9Y6W5 498 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 GTPBP10A4D1E9 387 aaKnown RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 F8VP50 259 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 H0YCG3 227 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 H0YGN5 161 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 HNRNPRO43390 633 aaKnown RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 MT-CO1P00395 513 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 NELFEP18615 380 aaKnown RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 AP1B1Q10567 949 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 KIF19Q2TAC6 998 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 MAGEC3Q8TD91 643 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 ACER1Q8TDN7 264 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 CNKSR1Q969H4 720 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 DTNBP1Q96EV8 351 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 PCDHB18PQ96TA0 734 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 NDNQ99608 321 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 NFS1Q9Y697 457 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 DRG2P55039 364 aaKnown RBP14.1□□□□□ -0.15
USP42-206ENST00000479544 STX1BP61266 288 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 ZDHHC24Q6UX98 284 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 PIDD1Q9HB75 910 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 GRHL1Q9NZI5 618 aa14.1□□□□□ -0.15
USP42-206ENST00000479544 C5orf60A6NFR6 353 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 SMNDC1O75940 238 aaKnown RBP eCLIP14.09□□□□□ -0.151e-6■■■■□ 23.6
USP42-206ENST00000479544 OASLQ15646 514 aaKnown RBP14.09□□□□□ -0.15
USP42-206ENST00000479544 UBAP2Q5T6F2 1119 aaKnown RBP14.09□□□□□ -0.15
USP42-206ENST00000479544 HEATR6Q6AI08 1181 aaKnown RBP14.09□□□□□ -0.15
USP42-206ENST00000479544 ACAD11Q709F0 780 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 TTC7BQ86TV6 843 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 TMPRSS6Q8IU80 811 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 MCOLN2Q8IZK6 566 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 RASGEF1CQ8N431 466 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 GDPD5Q8WTR4 605 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 PGBD4Q96DM1 585 aa14.09□□□□□ -0.15
USP42-206ENST00000479544 MRPL1Q9BYD6 325 aaKnown RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms