RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 MYH11P35749 1972 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 CITO14578 2027 aa4.67□□□□□ -1.66
VPS13D-206ENST00000476045 hCG_1642624A0A1W2PR95 340 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 FAM86B1E9PN63 330 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 GOLGA6L19H0YKK7 550 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 HRKO00198 91 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 RFXAPO00287 272 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 TBX3O15119 743 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 SHOXO15266 292 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 DCXO43602 365 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 EFEMP2O95967 443 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 CCNE2O96020 404 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 FAM86B2P0C5J1 330 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 ARP10275 920 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 ATF7P17544 494 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 KLRC1P26715 233 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 PDIA3P30101 505 aaKnown RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 KIR2DL1P43626 348 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 KIR2DL2P43627 348 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 DNM2P50570 870 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 SSRP1Q08945 709 aaKnown RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 COASYQ13057 564 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 SNW1Q13573 536 aaKnown RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 NONOQ15233 471 aaKnown RBP eCLIP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 SMAD2Q15796 467 aaKnown RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 Q4G0T1 1027 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 PRR16Q569H4 304 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 LRCH2Q5VUJ6 765 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 JAKMIP3Q5VZ66 844 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 KRT40Q6A162 431 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 CCDC73Q6ZRK6 1079 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 TMC3Q7Z5M5 1100 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 TMCO2Q7Z6W1 182 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 LINC01465Q8N7H1 131 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 EFHBQ8N7U6 833 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 SMRP1Q8NCR6 262 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 RASGRP4Q8TDF6 673 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 ERCC4Q92889 916 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 SLC5A5Q92911 643 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 NKD1Q969G9 470 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 LENG9Q96B70 501 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 FAM122AQ96E09 287 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 CCDC51Q96ER9 411 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 ZNF274Q96GC6 653 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 TCTN2Q96GX1 697 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 SCLT1Q96NL6 688 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 USP28Q96RU2 1077 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 PRRX2Q99811 253 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 LLPHQ9BRT6 129 aaKnown RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 SLC26A6Q9BXS9 759 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 INO80BQ9C086 356 aaPredicted RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 TMEM117Q9H0C3 514 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 SLC6A17Q9H1V8 727 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 EPB41L4BQ9H329 900 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 BCAS3Q9H6U6 928 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 AGO3Q9H9G7 860 aaKnown RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 ATP6V0A4Q9HBG4 840 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 TLR9Q9NR96 1032 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 RGS18Q9NS28 235 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 CLDND1Q9NY35 253 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 CD207Q9UJ71 328 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 RCOR1Q9UKL0 485 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 CFAP45Q9UL16 551 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 AKT3Q9Y243 479 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 MRPL42Q9Y6G3 142 aaKnown RBP4.66□□□□□ -1.66
VPS13D-206ENST00000476045 VPS13AQ96RL7 3174 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 DOCK8Q8NF50 2099 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 CACNA1AO00555 2505 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 ZNF292O60281 2723 aa4.66□□□□□ -1.66
VPS13D-206ENST00000476045 C2orf16Q68DN1 1984 aa4.65□□□□□ -1.66
VPS13D-206ENST00000476045 PDCD11Q14690 1871 aaKnown RBP4.65□□□□□ -1.66
VPS13D-206ENST00000476045 PTPRZ1P23471 2315 aaPredicted RBP4.65□□□□□ -1.66
VPS13D-206ENST00000476045 CYP3A7-CYP3A51PA0A087WV96 503 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 CCDC194A0A1B0GVG4 234 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 C9IYK1 514 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 PI4K2BG5E9Z4 385 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 DDX39AO00148 427 aaKnown RBP4.65□□□□□ -1.67
VPS13D-206ENST00000476045 ENPP3O14638 875 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 MSH4O15457 936 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 TBX10O75333 385 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 CLEC3AO75596 197 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 PRAMEF1O95521 474 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 EYA4O95677 639 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 ITGB1P05556 798 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 DARSP14868 501 aaKnown RBP4.65□□□□□ -1.67
VPS13D-206ENST00000476045 ZSCAN20P17040 1043 aaPredicted RBP4.65□□□□□ -1.67
VPS13D-206ENST00000476045 CYP3A7P24462 503 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 ME1P48163 572 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 NDUFV1P49821 464 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 GPC3P51654 580 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 NLRP5P59047 1200 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 HMGN5P82970 282 aaKnown RBP4.65□□□□□ -1.67
VPS13D-206ENST00000476045 ORC2Q13416 577 aaPredicted RBP4.65□□□□□ -1.67
VPS13D-206ENST00000476045 GIT2Q14161 759 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 IQCB1Q15051 598 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 STK38Q15208 465 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 NTRK3Q16288 839 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 STX1AQ16623 288 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 XKR3Q5GH77 459 aa4.65□□□□□ -1.67
VPS13D-206ENST00000476045 HERC4Q5GLZ8 1057 aaPredicted RBP4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms