RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 AK8Q96MA6 479 aa13.57□□□□□ -0.24
SKA3-206ENST00000475251 PLIN2Q99541 437 aa13.57□□□□□ -0.24
SKA3-206ENST00000475251 REEP2Q9BRK0 252 aa13.57□□□□□ -0.24
SKA3-206ENST00000475251 ADAM33Q9BZ11 813 aa13.57□□□□□ -0.24
SKA3-206ENST00000475251 FBRSL1Q9HCM7 1045 aaKnown RBP13.57□□□□□ -0.24
SKA3-206ENST00000475251 TCHHQ07283 1943 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 CHD6Q8TD26 2715 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 SDK1Q7Z5N4 2213 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 NPHP3-ACAD11A0A0J9YXS1 232 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 VWA3AA6NCI4 1184 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 DCLK1O15075 740 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 IL18RAPO95256 599 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 NFATC1O95644 943 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 CKMP06732 381 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 DPP6P42658 865 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 ACOT2P49753 483 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 LMAN2Q12907 356 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 TMEM119Q4V9L6 283 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 ARSHQ5FYA8 562 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 LMBRD2Q68DH5 695 aaPredicted RBP13.56□□□□□ -0.24
SKA3-206ENST00000475251 GPBP1Q86WP2 473 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 CNOT6LQ96LI5 555 aaKnown RBP13.56□□□□□ -0.24
SKA3-206ENST00000475251 MYRFLQ96LU7 910 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 ACBD6Q9BR61 282 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 PI4K2AQ9BTU6 479 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 TRPC7Q9HCX4 862 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 AGO2Q9UKV8 859 aaKnown RBP13.56□□□□□ -0.24
SKA3-206ENST00000475251 ANK1P16157 1881 aa13.56□□□□□ -0.24
SKA3-206ENST00000475251 OBSL1O75147 1896 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 ALDH1A2O94788 518 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 NOL4O94818 638 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 UBA7P41226 1012 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 GTF2BQ00403 316 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 MYL7Q01449 175 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 USP4Q13107 963 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 KCNB1Q14721 858 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 ZNF77Q15935 545 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 EML3Q32P44 896 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 RASSF3Q86WH2 238 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 TMEM86AQ8N2M4 240 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 TTC16Q8NEE8 873 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 ZHX3Q9H4I2 956 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 SLC32A1Q9H598 525 aa13.55□□□□□ -0.24
SKA3-206ENST00000475251 POLR3BQ9NW08 1133 aaPredicted RBP13.55□□□□□ -0.24
SKA3-206ENST00000475251 RALYQ9UKM9 306 aaKnown RBP13.55□□□□□ -0.24
SKA3-206ENST00000475251 GIPC1O14908 333 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 HUS1O60921 280 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 TCF3P15923 654 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 PFKLP17858 780 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 CDR1P51861 262 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 POSTNQ15063 836 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 MCTP1Q6DN14 999 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 SLC39A4Q6P5W5 647 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 RASSF8Q8NHQ8 419 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 RIN3Q8TB24 985 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 SPATA18Q8TC71 538 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 FUBP3Q96I24 572 aaKnown RBP eCLIP13.54□□□□□ -0.24
SKA3-206ENST00000475251 SPACA7Q96KW9 195 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 NUSAP1Q9BXS6 441 aaKnown RBP13.54□□□□□ -0.24
SKA3-206ENST00000475251 ST6GALNAC4Q9H4F1 302 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 DDX43Q9NXZ2 648 aaKnown RBP13.54□□□□□ -0.24
SKA3-206ENST00000475251 EVLQ9UI08 416 aaPredicted RBP13.54□□□□□ -0.24
SKA3-206ENST00000475251 WASF3Q9UPY6 502 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 WNT6Q9Y6F9 365 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 STYXL1Q9Y6J8 313 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 SCN1AP35498 2009 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 ATG2BQ96BY7 2078 aa13.54□□□□□ -0.24
SKA3-206ENST00000475251 FAM208BQ5VWN6 2430 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 KIAA1549LQ6ZVL6 1849 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 NUP205Q92621 2012 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 RDXP35241 583 aaKnown RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 DHPSP49366 369 aaPredicted RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 GPR15P49685 360 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 MRPS21P82921 87 aaKnown RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 BYSLQ13895 437 aaKnown RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 COL9A2Q14055 689 aaPredicted RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 DHX8Q14562 1220 aaKnown RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 DDR2Q16832 855 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 CFAP221Q4G0U5 840 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 HSF5Q4G112 596 aaPredicted RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 INTS6LQ5JSJ4 861 aaKnown RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 ANO7Q6IWH7 933 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 LPCAT2Q7L5N7 544 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 SPATA2LQ8IUW3 424 aaPredicted RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 KIAA1958Q8N8K9 716 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 USP33Q8TEY7 942 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 CACTINQ8WUQ7 758 aaKnown RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 POMGNT1Q8WZA1 660 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 EZH1Q92800 747 aaPredicted RBP13.53□□□□□ -0.24
SKA3-206ENST00000475251 HVCN1Q96D96 273 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 CEP295NLQ96MC4 621 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 DCBLD2Q96PD2 775 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 SCNM1Q9BWG6 230 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 TPSD1Q9BZJ3 242 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 TMLHEQ9NVH6 421 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 EHD2Q9NZN4 543 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 MMP17Q9ULZ9 603 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 ARHGAP26Q9UNA1 814 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 NEUROG3Q9Y4Z2 214 aa13.53□□□□□ -0.24
SKA3-206ENST00000475251 CDX4O14627 284 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms