RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 CFAP20Q9Y6A4 193 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-212ENST00000474059 CYSRT1A8MQ03 144 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 H7C1Q1 480 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 ADAM10O14672 748 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 PDE8BO95263 885 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 MT-CO1P00395 513 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 CYP2A6P11509 494 aaPredicted RBP4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 LEXMQ3ZCV2 418 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 CT47A1Q5JQC4 288 aaPredicted RBP4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 PGM2L1Q6PCE3 622 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 NANOGP1Q8N7R0 232 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 RBMXL3Q8N7X1 1067 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 C16orf52Q8NHV5 167 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 PIGOQ8TEQ8 1089 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 FAXDC2Q96IV6 333 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 MARK4Q96L34 752 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 TEKT5Q96M29 485 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 SLAMF7Q9NQ25 335 aa4.43□□□□□ -1.7
CCDC88A-212ENST00000474059 TLR5O60602 858 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 GNAI3P08754 354 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 PRF1P14222 555 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 HOXD9P28356 352 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 GNAI1P63096 354 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 Q6ZWC4 215 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 GLG1Q92896 1179 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 CAMK1GQ96NX5 476 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 LENG8Q96PV6 779 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 NELL2Q99435 816 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 NOTCH4Q99466 2003 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 MKS1Q9NXB0 559 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 HESX1Q9UBX0 185 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 GABRQQ9UN88 632 aa4.42□□□□□ -1.7
CCDC88A-212ENST00000474059 TCRBV5S1A1TA0A578 114 aa4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 M0QYG6 137 aa4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 THBS3P49746 956 aa4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 ACAP2Q15057 778 aa4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 PCBP2Q15366 365 aaKnown RBP eCLIP4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 MEX3CQ5U5Q3 659 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 ICE2Q659A1 982 aa4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 PPP4R3AQ6IN85 833 aa4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 SHC4Q6S5L8 630 aa4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 FAM46DQ8NEK8 389 aa4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 RP9Q8TA86 221 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 SLC46A1Q96NT5 459 aa4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 PPP1R10Q96QC0 940 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 MRPL46Q9H2W6 279 aaKnown RBP4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 PCDHA3Q9Y5H8 950 aa4.41□□□□□ -1.7
CCDC88A-212ENST00000474059 FGBP02675 491 aa4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 AHSGP02765 367 aa4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 PIM1P11309 404 aaPredicted RBP4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 CPEP16870 476 aa4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 PPIFP30405 207 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 SRSF1Q07955 248 aaKnown RBP eCLIP4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 ODF1Q14990 250 aa4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 MIS18BP1Q6P0N0 1132 aa4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 PARS2Q7L3T8 475 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 TTC7BQ86TV6 843 aa4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 NOP9Q86U38 636 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 PPP1R3BQ86XI6 285 aa4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 R3HDM4Q96D70 268 aa4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 PUS7LQ9H0K6 701 aaKnown RBP4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 ASIC5Q9NY37 505 aa4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 ZDHHC8Q9ULC8 765 aa4.4□□□□□ -1.71
CCDC88A-212ENST00000474059 LOC105371045A0A1W2PR82 267 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 A1L4Q6 167 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 KLHL33A6NCF5 533 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 POC1B-GALNT4F8VUJ3 575 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 ZRANB2O95218 330 aaKnown RBP eCLIP4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 TOMM40O96008 361 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 ALPLP05186 524 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 CSF1RP07333 972 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 NPSP0C0P6 89 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 FTH1P19P0C7X4 201 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 FPR3P25089 353 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 RBMS2Q15434 407 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 TWIST1Q15672 202 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 CYP1B1Q16678 543 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 ABCB5Q2M3G0 1257 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 RNASE12Q5GAN4 147 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 C10orf25Q5T742 122 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 FAM160B1Q5W0V3 765 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 KIAA1161Q6NSJ0 714 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 GALNT4Q8N4A0 578 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 LRRC71Q8N4P6 559 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 TERB1Q8NA31 727 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 PRSS3P2Q8NHM4 247 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 ZNF398Q8TD17 642 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 DAZAP1Q96EP5 407 aaKnown RBP4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 SNX18Q96RF0 628 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 TTYH3Q9C0H2 523 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 MAN1C1Q9NR34 630 aa4.39□□□□□ -1.71
CCDC88A-212ENST00000474059 FAM90A10PA6NDY2 464 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 MYMKA6NI61 221 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 GTPBP1O00178 669 aaKnown RBP4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 HSD3B2P26439 372 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 IL1R2P27930 398 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 THBS4P35443 961 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 RENBPP51606 427 aa4.38□□□□□ -1.71
CCDC88A-212ENST00000474059 LILRA4P59901 499 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms