RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 NDFIP2Q9NV92 336 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 ADGRA2Q96PE1 1338 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 ANKRD65E5RJM6 399 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 BMP10O95393 424 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 STKLD1Q8NE28 680 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 STN1Q9H668 368 aaKnown RBP13.81□□□□□ -0.2
COL6A3-209ENST00000472056 MEI4A8MW99 385 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 PRPF4O43172 522 aaKnown RBP eCLIP13.81□□□□□ -0.2
COL6A3-209ENST00000472056 SNAPC5O75971 98 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 FAM200BP0CF97 657 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 CDK7P50613 346 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 ADARP55265 1226 aaKnown RBP13.81□□□□□ -0.2
COL6A3-209ENST00000472056 DPYDQ12882 1025 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 GTF2H3Q13889 308 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 LONRF1Q17RB8 773 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 FAM98BQ52LJ0 330 aaKnown RBP13.81□□□□□ -0.2
COL6A3-209ENST00000472056 CCDC36Q8IYA8 594 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 DCPSQ96C86 337 aaKnown RBP13.81□□□□□ -0.2
COL6A3-209ENST00000472056 HSPBP1Q9NZL4 362 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 PHTF1Q9UMS5 762 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 RBP1P09455 135 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 CYP2C8P10632 490 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 GZMAP12544 262 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 ZBED2Q9BTP6 218 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 UTYO14607 1347 aa13.81□□□□□ -0.2
COL6A3-209ENST00000472056 ZC3H11AO75152 810 aaKnown RBP eCLIP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 PPIDQ08752 370 aaKnown RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 TXNRD1Q16881 649 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 DGCR14Q96DF8 476 aaKnown RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 HES6Q96HZ4 224 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 CDK8P49336 464 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 TBL3Q12788 808 aaKnown RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 COX10Q12887 443 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 UNC5CLQ8IV45 518 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 USP33Q8TEY7 942 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 C1orf54Q8WWF1 131 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 UGT2B28Q9BY64 529 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 FHDC1Q9C0D6 1143 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 MADDQ8WXG6 1647 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 CYP2E1P05181 493 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 IFNGR2P38484 337 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 PDK2Q15119 407 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 FASTKD5Q7L8L6 764 aaKnown RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 GANQ9H2C0 597 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 TMEM8AQ9HCN3 771 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 KDM6AO15550 1401 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 RAD51CO43502 376 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 TNFRSF8P28908 595 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 ARID5BQ14865 1188 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 KIAA0408Q6ZU52 694 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 MOSPD2Q8NHP6 518 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 SH3KBP1Q96B97 665 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 PCMTD2Q9NV79 361 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 POLG2Q9UHN1 485 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 DENND3A2RUS2 1198 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 CCNA2P20248 432 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 MTERF2Q49AM1 385 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 GADL1Q6ZQY3 521 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 UBXN6Q9BZV1 441 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 HOXC10Q9NYD6 342 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 AGO2Q9UKV8 859 aaKnown RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 DRG1Q9Y295 367 aaKnown RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 BTBD3Q9Y2F9 522 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 ANKRD6Q9Y2G4 727 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 MROH7Q68CQ1 1323 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 PNPLA7Q6ZV29 1317 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 RAP1GAPP47736 663 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 RASA2Q15283 850 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 CHI3L2Q15782 390 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 PAPD7Q5XG87 772 aaKnown RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 XRRA1Q6P2D8 792 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 SH2D3CQ8N5H7 860 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 LRRC7Q96NW7 1537 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 GREM2Q9H772 168 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 TMBIM4Q9HC24 238 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 RPRD1BQ9NQG5 326 aaKnown RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 KCND1Q9NSA2 647 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 TMCO1Q9UM00 188 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 AAR2Q9Y312 384 aaKnown RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 TEX28O15482 410 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 USP10Q14694 798 aaKnown RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 ZBTB49Q6ZSB9 765 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 VTA1Q9NP79 307 aa13.8□□□□□ -0.2
COL6A3-209ENST00000472056 C6orf203Q9P0P8 240 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-209ENST00000472056 USP6P35125 1406 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 IGSF9BQ9UPX0 1349 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 NPR3P17342 541 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 GARTP22102 1010 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 SLC9A5Q14940 896 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 BOLA3Q53S33 107 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 SAMD4BQ5PRF9 694 aaKnown RBP13.79□□□□□ -0.2
COL6A3-209ENST00000472056 AMER2Q8N7J2 671 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 RASGRP4Q8TDF6 673 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 TMEM79Q9BSE2 394 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 KCNF1Q9H3M0 494 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 SNAP91O60641 907 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 ZNF23P17027 643 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 MCL1Q07820 350 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 OR8H2Q8N162 312 aa13.79□□□□□ -0.2
COL6A3-209ENST00000472056 NLGN1Q8N2Q7 840 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms