RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 MAP3K13O43283 966 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 PTGIRP43119 386 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 TUBP50607 506 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 POU5F1Q01860 360 aaKnown RBP11.2□□□□□ -0.62
CHD3-208ENST00000470531 KLC1Q07866 573 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 FAAP100Q0VG06 881 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 EMC2Q15006 297 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 TAF5Q15542 800 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 FAM160B2Q86V87 743 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 RASGEF1CQ8N431 466 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 CCNYL1Q8N7R7 359 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 TEKT4Q8WW24 435 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 PIDD1Q9HB75 910 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 SLC5A4Q9NY91 659 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 ZNF232Q9UNY5 417 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 RIPK3Q9Y572 518 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 GAKO14976 1311 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 SPDYE5A6NIY4 337 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 A6NJR5 290 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 CYB561D2O14569 222 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 DNAJC6O75061 913 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 USP12O75317 370 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 PROSCO94903 275 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 PGK2P07205 417 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 CD48P09326 243 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 RFC1P35251 1148 aaPredicted RBP11.2□□□□□ -0.62
CHD3-208ENST00000470531 CLCN3P51790 818 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 ACTR2P61160 394 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 C15orf59Q2T9L4 293 aaPredicted RBP11.2□□□□□ -0.62
CHD3-208ENST00000470531 RFWD3Q6PCD5 774 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 ALYREFQ86V81 257 aaKnown RBP11.2□□□□□ -0.62
CHD3-208ENST00000470531 CRLF3Q8IUI8 442 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 SIAH1Q8IUQ4 282 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 ARHGAP24Q8N264 748 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 RYBPQ8N488 228 aaPredicted RBP11.2□□□□□ -0.62
CHD3-208ENST00000470531 CKAP2Q8WWK9 683 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 ZNF75CPQ92670 426 aaPredicted RBP11.2□□□□□ -0.62
CHD3-208ENST00000470531 PPWD1Q96BP3 646 aaKnown RBP11.2□□□□□ -0.62
CHD3-208ENST00000470531 CLMNQ96JQ2 1002 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 FEM1BQ9UK73 627 aa11.2□□□□□ -0.62
CHD3-208ENST00000470531 CACNA1SQ13698 1873 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 IQANK1A0A1B0GTG1 560 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 AIM2O14862 343 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 LUC7L3O95232 432 aaKnown RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 SNHG28P0DPA3 235 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 AP1B1Q10567 949 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 ZNF268Q14587 947 aaPredicted RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 COBLL1Q53SF7 1204 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 TCHHL1Q5QJ38 904 aaPredicted RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 MIPOL1Q8TD10 442 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 NLRP7Q8WX94 980 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 TRIM11Q96F44 468 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 ANKRD36BP1Q96IX9 119 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 TMEM120AQ9BXJ8 343 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 UBP1Q9NZI7 540 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 NUB1Q9Y5A7 615 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 NUP98P52948 1817 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 DPPA5A6NC42 116 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 SMNDC1O75940 238 aaKnown RBP eCLIP11.19□□□□□ -0.623e-14■■■■■ 30
CHD3-208ENST00000470531 CST3P01034 146 aaPredicted RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 ZBTB48P10074 688 aaPredicted RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 AQP5P55064 265 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 RPL10AP62906 217 aaKnown RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 KRT76Q01546 638 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 CUL3Q13618 768 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 MAPK6Q16659 721 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 KBTBD12Q3ZCT8 623 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 HABP4Q5JVS0 413 aaKnown RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 SH2D4BQ5SQS7 431 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 SNX30Q5VWJ9 437 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 SPATA24Q86W54 205 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 RASSF3Q86WH2 238 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 CCDC60Q8IWA6 550 aaPredicted RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 CEP70Q8NHQ1 597 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 PYDC1Q8WXC3 89 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 MAGEB18Q96M61 343 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 ROPN1BQ9BZX4 212 aaPredicted RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 ROPN1Q9HAT0 212 aaPredicted RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 HESX1Q9UBX0 185 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 DOCK2Q92608 1830 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 CCDC88AQ3V6T2 1871 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 GTPBP10A4D1E9 387 aaKnown RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 KBTBD13C9JR72 458 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 TOP3BO95985 862 aaKnown RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 GSTA1P08263 222 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 ADSSP30520 456 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 CASP2P42575 452 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 ROR1Q01973 937 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 EN1Q05925 392 aaPredicted RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 CYTH1Q15438 398 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 RNF220Q5VTB9 566 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 ANKRD22Q5VYY1 191 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 LAYNQ6UX15 382 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 VSTM1Q6UX27 236 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 ANO5Q75V66 913 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 FAM71AQ8IYT1 594 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 MAB21L3Q8N8X9 362 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 MCPH1Q8NEM0 835 aa11.19□□□□□ -0.62
CHD3-208ENST00000470531 NSUN6Q8TEA1 469 aaKnown RBP11.19□□□□□ -0.62
CHD3-208ENST00000470531 ART4Q93070 314 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms