RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 SPATA2LQ8IUW3 424 aaPredicted RBP18.76■□□□□ 0.59
COL7A1-208ENST00000470076 GLIS3Q8NEA6 775 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 FUBP3Q96I24 572 aaKnown RBP eCLIP18.76■□□□□ 0.59
COL7A1-208ENST00000470076 FAM84AQ96KN4 292 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 MYRFLQ96LU7 910 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 CCL26Q9Y258 94 aa18.76■□□□□ 0.59
COL7A1-208ENST00000470076 CUTAO60888 179 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 YEATS4O95619 227 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 LMNB2Q03252 620 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 RUNX3Q13761 415 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 ZNF268Q14587 947 aaPredicted RBP18.75■□□□□ 0.59
COL7A1-208ENST00000470076 RSPO4Q2I0M5 234 aaPredicted RBP18.75■□□□□ 0.59
COL7A1-208ENST00000470076 SOWAHAQ2M3V2 549 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 SDHAF4Q5VUM1 108 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 LMBRD2Q68DH5 695 aaPredicted RBP18.75■□□□□ 0.59
COL7A1-208ENST00000470076 TXNDC8Q6A555 127 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 CNNM4Q6P4Q7 775 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 CBWD2Q8IUF1 395 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 IQUBQ8NA54 791 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 OR5B17Q8NGF7 314 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 HPS3Q969F9 1004 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 HPDLQ96IR7 371 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 HSPBP1Q9NZL4 362 aa18.75■□□□□ 0.59
COL7A1-208ENST00000470076 TFIP11Q9UBB9 837 aaKnown RBP18.75■□□□□ 0.59
COL7A1-208ENST00000470076 PTPRJQ12913 1337 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 PRR5-ARHGAP8B1AHC4 643 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 CHURC1-FNTBB4DL54 471 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 K7ESF4 209 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 HOXA6P31267 233 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 HOXD13P35453 343 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 FNTBP49356 437 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 ASIC1P78348 528 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 ARHGAP8P85298 464 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 AMPD2Q01433 879 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 CC2D1AQ6P1N0 951 aaPredicted RBP18.74■□□□□ 0.59
COL7A1-208ENST00000470076 FAM171BQ6P995 826 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 C4orf50Q6ZRC1 276 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 EPM2AIP1Q7L775 607 aaPredicted RBP18.74■□□□□ 0.59
COL7A1-208ENST00000470076 LIMS2Q7Z4I7 341 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 LONP2Q86WA8 852 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 WDR49Q8IV35 697 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 STKLD1Q8NE28 680 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 ZNF507Q8TCN5 953 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 DHX58Q96C10 678 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 HPS4Q9NQG7 708 aa18.74■□□□□ 0.59
COL7A1-208ENST00000470076 NCOR2Q9Y618 2525 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 TADA3O75528 432 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 PDIA4P13667 645 aaKnown RBP18.73■□□□□ 0.59
COL7A1-208ENST00000470076 TGM1P22735 817 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 MAGEA11P43364 429 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 SIM2Q14190 667 aaPredicted RBP18.73■□□□□ 0.59
COL7A1-208ENST00000470076 PDGFRLQ15198 375 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 MAPRE1Q15691 268 aaKnown RBP18.73■□□□□ 0.59
COL7A1-208ENST00000470076 TMEM196Q5HYL7 178 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 FAM26FQ5R3K3 315 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 PRR23BQ6ZRT6 265 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 SCN4BQ8IWT1 228 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 EBF3Q9H4W6 596 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 MAGEF1Q9HAY2 307 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 CDH9Q9ULB4 789 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 USP18Q9UMW8 372 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 UBE4BO95155 1302 aa18.73■□□□□ 0.59
COL7A1-208ENST00000470076 GREB1Q4ZG55 1949 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 ANAPC1Q9H1A4 1944 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 TRDMT1O14717 391 aaKnown RBP18.72■□□□□ 0.59
COL7A1-208ENST00000470076 HCRTO43612 131 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 LRP3O75074 770 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 RETP07949 1114 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 SNRPFP62306 86 aaKnown RBP18.72■□□□□ 0.59
COL7A1-208ENST00000470076 FAM160A1Q05DH4 1040 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 DMWDQ09019 674 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 GRSF1Q12849 480 aaKnown RBP eCLIP18.72■□□□□ 0.59
COL7A1-208ENST00000470076 SNRNP35Q16560 246 aaKnown RBP18.72■□□□□ 0.59
COL7A1-208ENST00000470076 LPAL2Q16609 132 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 CCDC142Q17RM4 750 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 TRIM68Q6AZZ1 485 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 SHC4Q6S5L8 630 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 VSTM1Q6UX27 236 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 FSIP1Q8NA03 581 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 KBTBD7Q8WVZ9 684 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 CEP295NLQ96MC4 621 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 C7orf25Q9BPX7 421 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 SYT15Q9BQS2 421 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 AGPAT3Q9NRZ7 376 aa18.72■□□□□ 0.59
COL7A1-208ENST00000470076 MAGEC2Q9UBF1 373 aaPredicted RBP18.72■□□□□ 0.59
COL7A1-208ENST00000470076 TRAV19A0A0A6YYK7 116 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 OTOL1A6NHN0 477 aaPredicted RBP18.71■□□□□ 0.59
COL7A1-208ENST00000470076 HRO43593 1189 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 ATP2C2O75185 946 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 CKMP06732 381 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 USP17L7P0C7H9 530 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 WARSP23381 471 aaKnown RBP18.71■□□□□ 0.59
COL7A1-208ENST00000470076 MTF1Q14872 753 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 HEATR6Q6AI08 1181 aaKnown RBP18.71■□□□□ 0.59
COL7A1-208ENST00000470076 UNC13DQ70J99 1090 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 TRAPPC11Q7Z392 1133 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 RIN3Q8TB24 985 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 SNX21Q969T3 373 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 EXOC4Q96A65 974 aa18.71■□□□□ 0.59
COL7A1-208ENST00000470076 SPATA17Q96L03 361 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms