RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 RHOXF2Q9BQY4 288 aa20.04■□□□□ 0.8
SMC4-209ENST00000468653 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.04■□□□□ 0.82e-9■■■■■ 123.9
SMC4-209ENST00000468653 PPP1R12CQ9BZL4 782 aa20.04■□□□□ 0.8
SMC4-209ENST00000468653 PCDHA3Q9Y5H8 950 aa20.04■□□□□ 0.8
SMC4-209ENST00000468653 KRT3P12035 628 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 PAX3P23760 479 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 MARCKSL1P49006 195 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 AARSP49588 968 aaKnown RBP eCLIP20.03■□□□□ 0.83e-49■■■■■ 252.4
SMC4-209ENST00000468653 GSCP56915 257 aaPredicted RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 RNASELQ05823 741 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 PAN2Q504Q3 1202 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 DCAF12L1Q5VU92 463 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 DCLRE1AQ6PJP8 1040 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 DIS3LQ8TF46 1054 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 ARMC5Q96C12 935 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 ELAC1Q9H777 363 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 DDX43Q9NXZ2 648 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 KANSL3Q9P2N6 904 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 PCDHB7Q9Y5E2 793 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 TIMM13Q9Y5L4 95 aaPredicted RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 TDRD15B5MCY1 1934 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 BRCA2P51587 3418 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 SIGLEC16A6NMB1 481 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 PARNO95453 639 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 ODC1P11926 461 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 PTPN1P18031 435 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 ACAT1P24752 427 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 RGS7P49802 495 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 PEX5P50542 639 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 SNX16P57768 344 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 ZNF211Q13398 564 aaPredicted RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 PPP1R15BQ5SWA1 713 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 CCDC70Q6NSX1 233 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 ABI1Q8IZP0 508 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 MMGT1Q8N4V1 131 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 ANKRD52Q8NB46 1076 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 SLC2A14Q8TDB8 520 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 RNPC3Q96LT9 517 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 RBM12Q9NTZ6 932 aaKnown RBP20.03■□□□□ 0.8
SMC4-209ENST00000468653 USTQ9Y2C2 406 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 ATP11BQ9Y2G3 1177 aa20.03■□□□□ 0.8
SMC4-209ENST00000468653 ATP2C2O75185 946 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 MAN1A1P33908 653 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 SSR1P43307 286 aaKnown RBP20.02■□□□□ 0.8
SMC4-209ENST00000468653 LBX1P52954 281 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 BCAT1P54687 386 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 RWDD2BP57060 319 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 PDE4CQ08493 712 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 BST2Q10589 180 aaKnown RBP20.02■□□□□ 0.8
SMC4-209ENST00000468653 C1orf53Q5VUE5 145 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 METTL23Q86XA0 190 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 HASPINQ8TF76 798 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 SLC35F5Q8WV83 523 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 MCRS1Q96EZ8 462 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 FAM193BQ96PV7 902 aaPredicted RBP20.02■□□□□ 0.8
SMC4-209ENST00000468653 RNF216Q9NWF9 866 aaPredicted RBP20.02■□□□□ 0.8
SMC4-209ENST00000468653 LRFN2Q9ULH4 789 aa20.02■□□□□ 0.8
SMC4-209ENST00000468653 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.02■□□□□ 0.85e-47■■■■■ 274.1
SMC4-209ENST00000468653 E5RJQ4 531 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 I3L4J1 428 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 CYP2C18P33260 490 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 BRCC3P46736 316 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 GJA8P48165 433 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 CLUL1Q15846 466 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 SEL1L2Q5TEA6 688 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 OR6B2Q6IFH4 312 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 PMF1Q6P1K2 205 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 ZNF280BQ86YH2 543 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 STK32AQ8WU08 396 aa20.01■□□□□ 0.79
SMC4-209ENST00000468653 NAP1L3Q99457 506 aaPredicted RBP20.01■□□□□ 0.79
SMC4-209ENST00000468653 METTL5Q9NRN9 209 aaKnown RBP20.01■□□□□ 0.79
SMC4-209ENST00000468653 TTC7AQ9ULT0 858 aaPredicted RBP20.01■□□□□ 0.79
SMC4-209ENST00000468653 TULP2O00295 520 aa20■□□□□ 0.79
SMC4-209ENST00000468653 PIK3R2O00459 728 aa20■□□□□ 0.79
SMC4-209ENST00000468653 DDHD2O94830 711 aa20■□□□□ 0.79
SMC4-209ENST00000468653 FGGP02679 453 aa20■□□□□ 0.79
SMC4-209ENST00000468653 RFC1P35251 1148 aaPredicted RBP20■□□□□ 0.79
SMC4-209ENST00000468653 PIGHQ14442 188 aaPredicted RBP20■□□□□ 0.79
SMC4-209ENST00000468653 LONRF2Q1L5Z9 754 aa20■□□□□ 0.79
SMC4-209ENST00000468653 FAM102AQ5T9C2 384 aaPredicted RBP20■□□□□ 0.79
SMC4-209ENST00000468653 HNRNPABQ99729 332 aaKnown RBP20■□□□□ 0.79
SMC4-209ENST00000468653 SYT15Q9BQS2 421 aa20■□□□□ 0.79
SMC4-209ENST00000468653 SLC4A5Q9BY07 1137 aa20■□□□□ 0.79
SMC4-209ENST00000468653 PARD6BQ9BYG5 372 aa20■□□□□ 0.79
SMC4-209ENST00000468653 ANKZF1Q9H8Y5 726 aa20■□□□□ 0.79
SMC4-209ENST00000468653 TBC1D13Q9NVG8 400 aa20■□□□□ 0.79
SMC4-209ENST00000468653 DSEQ9UL01 958 aa20■□□□□ 0.79
SMC4-209ENST00000468653 CEP350Q5VT06 3117 aa20■□□□□ 0.79
SMC4-209ENST00000468653 ARHGEF37A1IGU5 675 aa20■□□□□ 0.79
SMC4-209ENST00000468653 KRIT1O00522 736 aa20■□□□□ 0.79
SMC4-209ENST00000468653 CXCL10P02778 98 aa20■□□□□ 0.79
SMC4-209ENST00000468653 PCSK1P29120 753 aa20■□□□□ 0.79
SMC4-209ENST00000468653 SLC8A3P57103 927 aa20■□□□□ 0.79
SMC4-209ENST00000468653 DSC1Q08554 894 aa20■□□□□ 0.79
SMC4-209ENST00000468653 MDH1BQ5I0G3 518 aa20■□□□□ 0.79
SMC4-209ENST00000468653 CD300LGQ6UXG3 332 aa20■□□□□ 0.79
SMC4-209ENST00000468653 DEFB128Q7Z7B8 93 aa20■□□□□ 0.79
SMC4-209ENST00000468653 RHOT1Q8IXI2 618 aa20■□□□□ 0.79
SMC4-209ENST00000468653 ANKLE1Q8NAG6 615 aa20■□□□□ 0.79
SMC4-209ENST00000468653 SPATA18Q8TC71 538 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms