RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 GLUD1P00367 558 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 CALCAP01258 141 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 ATF2P15336 505 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 CYP11B1P15538 503 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 BRD2P25440 801 aaKnown RBP16.75■□□□□ 0.27
USP40-206ENST00000443711 ELF1P32519 619 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 NRIP1P48552 1158 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 PDE6CP51160 858 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 ADKP55263 362 aaKnown RBP16.75■□□□□ 0.27
USP40-206ENST00000443711 ADCY1Q08828 1119 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 ARID5BQ14865 1188 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 DUSP6Q16828 381 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 CCDC142Q17RM4 750 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 PPP1R26Q5T8A7 1209 aaPredicted RBP16.75■□□□□ 0.27
USP40-206ENST00000443711 LILRA6Q6PI73 481 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 ADGRD2Q7Z7M1 963 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 RBM23Q86U06 439 aaKnown RBP16.75■□□□□ 0.27
USP40-206ENST00000443711 SLC2A14Q8TDB8 520 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 ZNF606Q8WXB4 792 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 PGLYRP2Q96PD5 576 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 DNAJC7Q99615 494 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 ABCB6Q9NP58 842 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 ACP6Q9NPH0 428 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 ZNHIT6Q9NWK9 470 aaKnown RBP16.75■□□□□ 0.27
USP40-206ENST00000443711 ABI2Q9NYB9 513 aaPredicted RBP16.75■□□□□ 0.27
USP40-206ENST00000443711 MTCH2Q9Y6C9 303 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 CHD7Q9P2D1 2997 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 PLXNA3P51805 1871 aa16.75■□□□□ 0.27
USP40-206ENST00000443711 O00370 1275 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 PER2O15055 1255 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 TGM5O43548 720 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 CCDC130P13994 396 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 IGFBP4P22692 258 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 ADORA2BP29275 332 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 HNRNPH3P31942 346 aaKnown RBP16.74■□□□□ 0.27
USP40-206ENST00000443711 CLCN4P51793 760 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 KLHL30Q0D2K2 578 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 CFAP221Q4G0U5 840 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 LCLAT1Q6UWP7 414 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 PAQR9Q6ZVX9 377 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 FAM35AQ86V20 835 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 ZNF677Q86XU0 584 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 GPIHBP1Q8IV16 184 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 FUKQ8N0W3 1084 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 ATAD1Q8NBU5 361 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 EPS8L1Q8TE68 723 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 SLC22A17Q8WUG5 538 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 ABHD10Q9NUJ1 306 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 HSFX1Q9UBD0 423 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 HESX1Q9UBX0 185 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 DPP7Q9UHL4 492 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 BZW2Q9Y6E2 419 aaKnown RBP16.74■□□□□ 0.27
USP40-206ENST00000443711 TRANK1O15050 2925 aa16.74■□□□□ 0.27
USP40-206ENST00000443711 PRRC2BQ5JSZ5 2229 aaKnown RBP16.73■□□□□ 0.27
USP40-206ENST00000443711 CLDN5O00501 218 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 PRRG1O14668 218 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 VNN2O95498 520 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 SERPING1P05155 500 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 HAPLN1P10915 354 aaPredicted RBP16.73■□□□□ 0.27
USP40-206ENST00000443711 BDNFP23560 247 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 PRKCIP41743 596 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 MAGEA11P43364 429 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 TUFMP49411 452 aaKnown RBP16.73■□□□□ 0.27
USP40-206ENST00000443711 CDR1P51861 262 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 GOLGA8FQ08AF8 430 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 GOLGA8DPQ0D2H9 430 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 DUSP4Q13115 394 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 ADGRE1Q14246 886 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 GOLGA7BQ2TAP0 167 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 TCEAL5Q5H9L2 206 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 E4F1Q66K89 784 aaPredicted RBP16.73■□□□□ 0.27
USP40-206ENST00000443711 ELMSAN1Q6PJG2 1045 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 VSTM1Q6UX27 236 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 NOP9Q86U38 636 aaKnown RBP16.73■□□□□ 0.27
USP40-206ENST00000443711 TCEAL8Q8IYN2 117 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 TC2NQ8N9U0 490 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 ANKRD52Q8NB46 1076 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 KREMEN2Q8NCW0 462 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 HDAC7Q8WUI4 952 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 SMARCD1Q96GM5 515 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 ZSWIM1Q9BR11 485 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 ZNF518BQ9C0D4 1074 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 PDCL3Q9H2J4 239 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 PLEKHA4Q9H4M7 779 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 CYP4F11Q9HBI6 524 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 NOCTQ9UK39 431 aaKnown RBP16.73■□□□□ 0.27
USP40-206ENST00000443711 FBXW11Q9UKB1 542 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 TSPAN16Q9UKR8 245 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.73■□□□□ 0.27
USP40-206ENST00000443711 SLC27A5Q9Y2P5 690 aa16.73■□□□□ 0.27
USP40-206ENST00000443711 AP1G2O75843 785 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 SLC34A2O95436 690 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 SEC24AO95486 1093 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 SPATA31D3P0C874 917 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 FAM200BP0CF97 657 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 SKILP12757 684 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 CYP2F1P24903 491 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 SLC8A3P57103 927 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 GSDMDP57764 484 aa16.72■□□□□ 0.27
USP40-206ENST00000443711 CDR2Q01850 454 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms