RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SAMSN1Q9NSI8 373 aaKnown RBP7.46□□□□□ -1.21
VPS53-204ENST00000437048 IL18RAPO95256 599 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 BNIP2Q12982 314 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 PPM1NQ8N819 430 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 SNX31Q8N9S9 440 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 BTBD9Q96Q07 612 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 TEX13BQ9BXU2 312 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 MAP3K19Q56UN5 1328 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 ALADP13716 330 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 ACAP1Q15027 740 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 FBXW10Q5XX13 1052 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.46□□□□□ -1.222e-7■■■■■ 278.5
VPS53-204ENST00000437048 PAGR1Q9BTK6 254 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 SARSP49591 514 aaKnown RBP7.46□□□□□ -1.22
VPS53-204ENST00000437048 CACNA2D1P54289 1103 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 DDB1Q16531 1140 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 SEL1L3Q68CR1 1132 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 ADHFE1Q8IWW8 467 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 ANKRD13AQ8IZ07 590 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 ABHD8Q96I13 439 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 MNTQ99583 582 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 OSBPL6Q9BZF3 934 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 VPS11Q9H270 941 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 CLUHO75153 1309 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 PIK3CDO00329 1044 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 ZNF394Q53GI3 561 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 EAPPQ56P03 285 aaPredicted RBP7.46□□□□□ -1.22
VPS53-204ENST00000437048 FOXP4Q8IVH2 680 aaPredicted RBP7.46□□□□□ -1.22
VPS53-204ENST00000437048 GTF3C2Q8WUA4 911 aaPredicted RBP7.46□□□□□ -1.22
VPS53-204ENST00000437048 AURKCQ9UQB9 309 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 NNMTP40261 264 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 FAM98BQ52LJ0 330 aaKnown RBP7.46□□□□□ -1.22
VPS53-204ENST00000437048 SPDYAQ5MJ70 313 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 RIBC2Q9H4K1 309 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 EIF3LQ9Y262 564 aaKnown RBP7.46□□□□□ -1.22
VPS53-204ENST00000437048 IRAK3Q9Y616 596 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 PNMA6EA0A0J9YXQ4 647 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 GNB5O14775 395 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 UBTFL6P0CB48 400 aaPredicted RBP7.46□□□□□ -1.22
VPS53-204ENST00000437048 PEPDP12955 493 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 FAM189A2Q15884 450 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 SFRP1Q8N474 314 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 ITFG2Q969R8 447 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 MCCC1Q96RQ3 725 aaPredicted RBP7.46□□□□□ -1.22
VPS53-204ENST00000437048 ECSITQ9BQ95 431 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 SLITRK2Q9H156 845 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 NEXMIFQ5QGS0 1516 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 PPP2R1BP30154 601 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 ABCB5Q2M3G0 1257 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 C6orf52Q5T4I8 152 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 ANKRD13CQ8N6S4 541 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 UHMK1Q8TAS1 419 aaKnown RBP7.46□□□□□ -1.22
VPS53-204ENST00000437048 FAM193BQ96PV7 902 aaPredicted RBP7.46□□□□□ -1.22
VPS53-204ENST00000437048 TBCBQ99426 244 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 EURLQ9NYK6 297 aa7.46□□□□□ -1.22
VPS53-204ENST00000437048 ADD2P35612 726 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 DPYSQ14117 519 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 NEDD1Q8NHV4 660 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ZBTB10Q96DT7 871 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ZNF512BQ96KM6 892 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 RBM47A0AV96 593 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 FKBP9O95302 570 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 PADI6Q6TGC4 694 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 BNIPLQ7Z465 357 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 NIM1KQ8IY84 436 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 NPHS2Q9NP85 383 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 APEX2Q9UBZ4 518 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 TRDMT1O14717 391 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 FARP2O94887 1054 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 CYP21A2P08686 494 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 MAPK9P45984 424 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 NR2C2P49116 596 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 HAUS6Q7Z4H7 955 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ZNF589Q86UQ0 364 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 EID3Q8N140 333 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 FBXL16Q8N461 479 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 EXD1Q8NHP7 514 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 RAD54LQ92698 747 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 IFT43Q96FT9 208 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 THAP1Q9NVV9 213 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ZSCAN32Q9NX65 697 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 CCDC182A6NF36 153 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 S100A6P06703 90 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 PTK7Q13308 1070 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 CERKLQ49MI3 558 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 MTX3Q5HYI7 312 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 EIF5AL1Q6IS14 154 aaKnown RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 OR7A2PQ8NGA2 310 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 FICDQ9BVA6 458 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ZBTB21Q9ULJ3 1066 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 LRRN2O75325 713 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 SAT1P21673 171 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 BROXQ5VW32 411 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 MOXD1Q6UVY6 613 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 G2E3Q7L622 706 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 FUKQ8N0W3 1084 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 ARL8AQ96BM9 186 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 EAF2Q96CJ1 260 aaPredicted RBP7.45□□□□□ -1.22
VPS53-204ENST00000437048 MLXIPQ9HAP2 919 aa7.45□□□□□ -1.22
VPS53-204ENST00000437048 SPACA6W5XKT8 324 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms