RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 VPS37AQ8NEZ2 397 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 DPF3Q92784 378 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 FBXO32Q969P5 355 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 PRPF18Q99633 342 aaKnown RBP16.01■□□□□ 0.15
PTPRF-206ENST00000429895 CHST12Q9NRB3 414 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 RBM12Q9NTZ6 932 aaKnown RBP16.01■□□□□ 0.15
PTPRF-206ENST00000429895 VTNP04004 478 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 STAG3L1P0CL83 205 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 CPA2P48052 419 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 PRIM2P49643 509 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 GALNTL6Q49A17 601 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 TRIM65Q6PJ69 517 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 STN1Q9H668 368 aaKnown RBP16.01■□□□□ 0.15
PTPRF-206ENST00000429895 GID8Q9NWU2 228 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 RASSF9O75901 435 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 KRT16P08779 473 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 KYNUQ16719 465 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 JAMLQ86YT9 394 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 DMAP1Q9NPF5 467 aaPredicted RBP16■□□□□ 0.15
PTPRF-206ENST00000429895 SF3B3Q15393 1217 aaKnown RBP16■□□□□ 0.15
PTPRF-206ENST00000429895 YME1L1Q96TA2 773 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 RAD51CO43502 376 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 B3GAT3O94766 335 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 RBP3P10745 1247 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 RAP1GAPP47736 663 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 NME5P56597 212 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 EXOSC10Q01780 885 aaKnown RBP16■□□□□ 0.15
PTPRF-206ENST00000429895 DNAL1Q4LDG9 190 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 PRUNE1Q86TP1 453 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 TRIM69Q86WT6 500 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 COPS7BQ9H9Q2 264 aaPredicted RBP16■□□□□ 0.15
PTPRF-206ENST00000429895 C2orf81A6NN90 581 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 MAP3K13O43283 966 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 RHOBTB3O94955 611 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 APOA4P06727 396 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 DNAJB2P25686 324 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 SBK1Q52WX2 424 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 E4F1Q66K89 784 aaPredicted RBP16■□□□□ 0.15
PTPRF-206ENST00000429895 OTOAQ7RTW8 1153 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 ZNF473Q8WTR7 871 aaKnown RBP16■□□□□ 0.15
PTPRF-206ENST00000429895 SOAT2O75908 522 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 ACOT1Q86TX2 421 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 KLC4Q9NSK0 619 aa16■□□□□ 0.15
PTPRF-206ENST00000429895 H7C4K7 107 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 CDH16O75309 829 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 RGS2P41220 211 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 VN1R5Q7Z5H4 357 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 ARMC2Q8NEN0 867 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 RIN3Q8TB24 985 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 ECSITQ9BQ95 431 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 SENP2Q9HC62 589 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 SPTLC1O15269 473 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 DEAF1O75398 565 aaPredicted RBP15.99■□□□□ 0.15
PTPRF-206ENST00000429895 SKAP2O75563 359 aaPredicted RBP15.99■□□□□ 0.15
PTPRF-206ENST00000429895 PNPLA4P41247 253 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 PHACTR4Q8IZ21 702 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 ERP27Q96DN0 273 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 ERLEC1Q96DZ1 483 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 THUMPD3Q9BV44 507 aaKnown RBP15.99■□□□□ 0.15
PTPRF-206ENST00000429895 TMEM245Q9H330 911 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 LRRIQ3A6PVS8 624 aaPredicted RBP15.99■□□□□ 0.15
PTPRF-206ENST00000429895 GPC1P35052 558 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 RUNX1T1Q06455 604 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 PGS1Q32NB8 556 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 ANKS6Q68DC2 871 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 UGT3A1Q6NUS8 523 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 DEFB128Q7Z7B8 93 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 TBX20Q9UMR3 447 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 XPO1O14980 1071 aaKnown RBP15.99■□□□□ 0.15
PTPRF-206ENST00000429895 CKMP06732 381 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 PLCL1Q15111 1095 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 C2CD6Q53TS8 623 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 TRAPPC11Q7Z392 1133 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 KCNK16Q96T55 309 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 NFKBIZQ9BYH8 718 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 GRID1Q9ULK0 1009 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 ZNF609O15014 1411 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 A0A1B0GTH6 734 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 GPR182O15218 404 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 CAMTA2O94983 1202 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 CAMK2GQ13555 558 aaPredicted RBP15.99■□□□□ 0.15
PTPRF-206ENST00000429895 DDX42Q86XP3 938 aaKnown RBP eCLIP15.99■□□□□ 0.15
PTPRF-206ENST00000429895 RERGLQ9H628 205 aa15.99■□□□□ 0.15
PTPRF-206ENST00000429895 UBQLN1Q9UMX0 589 aaKnown RBP15.99■□□□□ 0.15
PTPRF-206ENST00000429895 EIF3DO15371 548 aaKnown RBP eCLIP15.98■□□□□ 0.15
PTPRF-206ENST00000429895 PCNAP12004 261 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 TGM2P21980 687 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 GTF2A2P52657 109 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 CNTN1Q12860 1018 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 IL17RAQ96F46 866 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 MANSC1Q9H8J5 431 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 B2RBV5 119 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 RPS7P62081 194 aaKnown RBP15.98■□□□□ 0.15
PTPRF-206ENST00000429895 P3H2Q8IVL5 708 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 STAMBPL1Q96FJ0 436 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 MAP10Q9P2G4 905 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 KLHL2O95198 593 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 FXR1P51114 621 aaKnown RBP eCLIP15.98■□□□□ 0.15
PTPRF-206ENST00000429895 CLCN3P51790 818 aa15.98■□□□□ 0.15
PTPRF-206ENST00000429895 SEMA3FQ13275 785 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms