RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 NKIRAS1Q9NYS0 192 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 LRRIQ4A6NIV6 560 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 OATP04181 439 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 GJB1P08034 283 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 NAMPTP43490 491 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 CTCFP49711 727 aaPredicted RBP10.38□□□□□ -0.75
SS18-203ENST00000415083 IL9RQ01113 521 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 TAF1BQ53T94 588 aaPredicted RBP10.38□□□□□ -0.75
SS18-203ENST00000415083 SYCP2LQ5T4T6 812 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 NPNTQ6UXI9 565 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 CDHR3Q6ZTQ4 885 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 ANKRD35Q8N283 1001 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 TTLL6Q8N841 843 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 GBP7Q8N8V2 638 aaPredicted RBP10.38□□□□□ -0.75
SS18-203ENST00000415083 PIWIL1Q96J94 861 aaKnown RBP10.38□□□□□ -0.75
SS18-203ENST00000415083 CFAP57Q96MR6 1250 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 CPXM1Q96SM3 734 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 NIFKQ9BYG3 293 aaKnown RBP10.38□□□□□ -0.75
SS18-203ENST00000415083 DENND2DQ9H6A0 471 aaPredicted RBP10.38□□□□□ -0.75
SS18-203ENST00000415083 TLE6Q9H808 572 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 ALG13Q9NP73 1137 aaKnown RBP10.38□□□□□ -0.75
SS18-203ENST00000415083 KLHL14Q9P2G3 628 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 SCINQ9Y6U3 715 aa10.38□□□□□ -0.75
SS18-203ENST00000415083 TRIP11Q15643 1979 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 FAM155BO75949 473 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 IQCF3P0C7M6 154 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 TPBGLP0DKB5 382 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 PTPRAP18433 802 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 TUBP50607 506 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 HMGCS2P54868 508 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 NR1H3Q13133 447 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 RASA2Q15283 850 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 PARP6Q2NL67 630 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 ZBTB33Q86T24 672 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 PRPF39Q86UA1 669 aaKnown RBP10.37□□□□□ -0.75
SS18-203ENST00000415083 FBF1Q8TES7 1133 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 LRRN4Q8WUT4 740 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 PTCD3Q96EY7 689 aaKnown RBP10.37□□□□□ -0.75
SS18-203ENST00000415083 PCDH9Q9HC56 1237 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 WDR91A4D1P6 747 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 K7ERI5 159 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 ENTPD5O75356 428 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 AVILO75366 819 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 WFS1O76024 890 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 MYCNP04198 464 aaPredicted RBP10.37□□□□□ -0.75
SS18-203ENST00000415083 ERBB2P04626 1255 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 DHRS4L1P0CG22 281 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 ZNF280AP59817 542 aaPredicted RBP10.37□□□□□ -0.75
SS18-203ENST00000415083 MCL1Q07820 350 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 MMRN1Q13201 1228 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 XRRA1Q6P2D8 792 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 SCARA5Q6ZMJ2 495 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 CDR2LQ86X02 465 aaPredicted RBP10.37□□□□□ -0.75
SS18-203ENST00000415083 BRSK2Q8IWQ3 736 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 BBOF1Q8ND07 529 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 TCP10LQ8TDR4 215 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 NSUN6Q8TEA1 469 aaKnown RBP10.37□□□□□ -0.75
SS18-203ENST00000415083 IFT74Q96LB3 600 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 TRIM56Q9BRZ2 755 aaKnown RBP10.37□□□□□ -0.75
SS18-203ENST00000415083 ASCC2Q9H1I8 757 aaPredicted RBP10.37□□□□□ -0.75
SS18-203ENST00000415083 VPS37BQ9H9H4 285 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 CNTN3Q9P232 1028 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 EVPLQ92817 2033 aa10.37□□□□□ -0.75
SS18-203ENST00000415083 CCDC189A1A4V9 331 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 LRRD1A4D1F6 860 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 SIGLEC16A6NMB1 481 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 TRAFD1O14545 582 aaPredicted RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 MAFGO15525 162 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 TJP3O95049 919 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 CYP3A5P20815 502 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 CDH8P55286 799 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 ZNF449Q6P9G9 518 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 DLK2Q6UY11 383 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 MTDHQ86UE4 582 aaKnown RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 LRRC6Q86X45 466 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 FBXO36Q8NEA4 188 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 SHKBP1Q8TBC3 707 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 NRG4Q8WWG1 115 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 GRAMD1AQ96CP6 724 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 RBM41Q96IZ5 413 aaKnown RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 ZNF668Q96K58 619 aaPredicted RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 PAFAH2Q99487 392 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 ZWILCHQ9H900 591 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 NPHS2Q9NP85 383 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 ARL8BQ9NVJ2 186 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 SIX4Q9UIU6 781 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 ZNF112Q9UJU3 913 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 PCDHGC3Q9UN70 934 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 SHOC2Q9UQ13 582 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 USH1CQ9Y6N9 552 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 POLR2AP24928 1970 aaKnown RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 MCM3APO60318 1980 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 SGK1O00141 431 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 ADCY3O60266 1144 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 CA4P22748 312 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 KDELR1P24390 212 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 FBXO27Q8NI29 283 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 CADM1Q9BY67 442 aaKnown RBP10.36□□□□□ -0.75
SS18-203ENST00000415083 FOXP3Q9BZS1 431 aa10.36□□□□□ -0.75
SS18-203ENST00000415083 ZNF302Q9NR11 478 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms