RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 NGRNQ9NPE2 291 aaKnown RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 GSTK1Q9Y2Q3 226 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 MAP2P11137 1827 aaKnown RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 FARP2O94887 1054 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 MSH3P20585 1137 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 RABL6Q3YEC7 729 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 OR6B2Q6IFH4 312 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 STRA8Q7Z7C7 330 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 LRRC34Q8IZ02 419 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 TRPM1Q7Z4N2 1603 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 ZBTB39O15060 712 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 UBOX5O94941 541 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 PTGS2P35354 604 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 RAB2AP61019 212 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 ATP2C1P98194 919 aaPredicted RBP13.38□□□□□ -0.27
COL6A3-206ENST00000409809 LRRC17Q8N6Y2 441 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 ERGIC2Q96RQ1 377 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 SLC52A2Q9HAB3 445 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 RGS18Q9NS28 235 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 ATPIF1Q9UII2 106 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 TRIM74Q86UV6 250 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 TRIM73Q86UV7 250 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 CASS4Q9NQ75 786 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 LMCD1Q9NZU5 365 aa13.38□□□□□ -0.27
COL6A3-206ENST00000409809 H3BMM5 538 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 TLR2O60603 784 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 MYL12AP19105 171 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 NAB1Q13506 487 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 ABRAXAS1Q6UWZ7 409 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 ADSSL1Q8N142 457 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 DHX36Q9H2U1 1008 aaKnown RBP13.37□□□□□ -0.27
COL6A3-206ENST00000409809 GOLPH3Q9H4A6 298 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 UBP1Q9NZI7 540 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 SPHKAPQ2M3C7 1700 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 DNAJC3Q13217 504 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 FBXO31Q5XUX0 539 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-206ENST00000409809 NUAK2Q9H093 628 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 DDX18Q9NVP1 670 aaKnown RBP13.37□□□□□ -0.27
COL6A3-206ENST00000409809 KCNK4Q9NYG8 393 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 RPL19P84098 196 aaKnown RBP13.37□□□□□ -0.27
COL6A3-206ENST00000409809 SPIDRQ14159 915 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 QPRTQ15274 297 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 STXBP2Q15833 593 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 CLEC4GQ6UXB4 293 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 DGKHQ86XP1 1220 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 PGM2Q96G03 612 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 THAP1Q9NVV9 213 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 APEX2Q9UBZ4 518 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 CYP2D7A0A087X1C5 515 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-206ENST00000409809 GRAMD1CQ8IYS0 662 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 KANSL2Q9H9L4 492 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 NCKIPSDQ9NZQ3 722 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 NFKBIL1Q9UBC1 381 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-206ENST00000409809 PCDHB6Q9Y5E3 794 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 CEP170Q5SW79 1584 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 APRTP07741 180 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 GP5P40197 560 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 COASYQ13057 564 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 TMC4Q7Z404 712 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 SNX31Q8N9S9 440 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 USP13Q92995 863 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-206ENST00000409809 AGPAT1Q99943 283 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 MSTO1Q9BUK6 570 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 VAMP7P51809 220 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 NCALDP61601 193 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 MYBPC2Q14324 1141 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 PDIA5Q14554 519 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 FIGNQ5HY92 759 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 TTC30BQ8N4P2 665 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 TGFBRAP1Q8WUH2 860 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 FAM193BQ96PV7 902 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-206ENST00000409809 ASB2Q96Q27 587 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 TOPORSQ9NS56 1045 aaPredicted RBP13.37□□□□□ -0.27
COL6A3-206ENST00000409809 PCMTD2Q9NV79 361 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 TMED5Q9Y3A6 229 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 RFC5P40937 340 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 SPATA17Q96L03 361 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 CCSER1Q9C0I3 900 aa13.37□□□□□ -0.27
COL6A3-206ENST00000409809 ERVV-2B6SEH9 535 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 FESP07332 822 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 CDK7P50613 346 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 RFX4Q33E94 735 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 SPICE1Q8N0Z3 855 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 SCAIQ8N9R8 606 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 ARHGEF38Q9NXL2 777 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 COMMD9Q9P000 198 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 UBA6A0AVT1 1052 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-206ENST00000409809 ITGAXP20702 1163 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 SFNP31947 248 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 MAPKAPK2P49137 400 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 LPIN1Q14693 890 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 PDK1Q15118 436 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 EAPPQ56P03 285 aaPredicted RBP13.36□□□□□ -0.27
COL6A3-206ENST00000409809 PKN3Q6P5Z2 889 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 NSMFQ6X4W1 530 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 SLC35G2Q8TBE7 412 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 PROX1Q92786 737 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 Q96MT0 163 aa13.36□□□□□ -0.27
COL6A3-206ENST00000409809 DNAJC7Q99615 494 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms