RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 PIM2Q9P1W9 311 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 KCNH4Q9UQ05 1017 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 LRCH1Q9Y2L9 728 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 PKP3Q9Y446 797 aa6.34□□□□□ -1.4
SCN1A-203ENST00000409050 PRPF4O43172 522 aaKnown RBP eCLIP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TEX33O43247 280 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ERBB2P04626 1255 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 KITP10721 976 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 VDRP11473 427 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 RPS12P25398 132 aaKnown RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TNFRSF8P28908 595 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 AKT1P31749 480 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 SNRNP35Q16560 246 aaKnown RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 THEMIS2Q5TEJ8 643 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 SUSD4Q5VX71 490 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 LRRC8DQ7L1W4 858 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 LZTR1Q8N653 840 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 C1orf54Q8WWF1 131 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 BSNDQ8WZ55 320 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 DYNLL2Q96FJ2 89 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 CLMNQ96JQ2 1002 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 RAD18Q9NS91 495 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TBC1D13Q9NVG8 400 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 AHSPQ9NZD4 102 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 RSL24D1Q9UHA3 163 aaKnown RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 DPP7Q9UHL4 492 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 HEATR9A2RTY3 570 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 SDR42E2A6NKP2 422 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 DYRK3O43781 588 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 IFNGR2P38484 337 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 STAT5AP42229 794 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 STRIP1Q5VSL9 837 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 SWSAP1Q6NVH7 229 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 IRGCQ6NXR0 463 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 SLC26A11Q86WA9 606 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TFB1MQ8WVM0 346 aaKnown RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 IL17RAQ96F46 866 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 VAT1Q99536 393 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ECSITQ9BQ95 431 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 THTPAQ9BU02 230 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TRIM8Q9BZR9 551 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 SEC31BQ9NQW1 1179 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 RGS18Q9NS28 235 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 PCSK1NQ9UHG2 260 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TSC22D4Q9Y3Q8 395 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 C2orf81A6NN90 581 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 HACD1B0YJ81 288 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 KPNA6O60684 536 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 STX11O75558 287 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TNFAIP8O95379 198 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 MED26O95402 600 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 MLNP12872 115 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ENO3P13929 434 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 VCLP18206 1134 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 GPSM2P81274 684 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 KDSRQ06136 332 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 COG2Q14746 738 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ZCCHC8Q6NZY4 707 aaKnown RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TRAF7Q6Q0C0 670 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 C3orf62Q6ZUJ4 267 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 PRPF39Q86UA1 669 aaKnown RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 SCUBE1Q8IWY4 988 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 MICALL2Q8IY33 904 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 FAM45AQ8TCE6 357 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 WDR60Q8WVS4 1066 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ZIM3Q96PE6 472 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 WDR24Q96S15 920 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 NPHS2Q9NP85 383 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 COMMD8Q9NX08 183 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 NCKIPSDQ9NZQ3 722 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TPRKBQ9Y3C4 175 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ALG6Q9Y672 507 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 UNC13BO14795 1591 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ENO4A6NNW6 628 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 CYP26A1O43174 497 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 FKBP9O95302 570 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TRIM49P0CI25 452 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TRIM49CP0CI26 452 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 RBP3P10745 1247 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 H2AFXP16104 143 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 POU4F1Q01851 419 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 NFX1Q12986 1120 aaKnown RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 PRKAA1Q13131 559 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF211Q13398 564 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF484Q5JVG2 852 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 C6orf10Q5SRN2 563 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 C16orf86Q6ZW13 317 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 FKBP9P1Q75LS8 142 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 KRT74Q7RTS7 529 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 OOSP2Q86WS3 158 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF333Q96JL9 665 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TSPAN18Q96SJ8 248 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 BDH2Q9BUT1 245 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 MAF1Q9H063 256 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 C20orf96Q9NUD7 363 aaPredicted RBP6.33□□□□□ -1.4
SCN1A-203ENST00000409050 WDR70Q9NW82 654 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 MTMR4Q9NYA4 1195 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 CD274Q9NZQ7 290 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 TRPM5Q9NZQ8 1165 aa6.33□□□□□ -1.4
SCN1A-203ENST00000409050 ASAP1Q9ULH1 1129 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms