RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 HPS5Q9UPZ3 1129 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 EIF3LQ9Y262 564 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 TBKBP1A7MCY6 615 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 ITGB3P05106 788 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 PGM1P36871 562 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 ERFP50548 548 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 GEMP55040 296 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 TRIP4Q15650 581 aaPredicted RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 BOLA3Q53S33 107 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 CDC42EP5Q6NZY7 148 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 DENND1BQ6P3S1 775 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 TRMT11Q7Z4G4 463 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 COMMD2Q86X83 199 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 MYO1HQ8N1T3 1032 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 B3GALNT2Q8NCR0 500 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 AGBL3Q8NEM8 1001 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 EME1Q96AY2 570 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 ASCC2Q9H1I8 757 aaPredicted RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 PCMTD2Q9NV79 361 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 APEX2Q9UBZ4 518 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 PADI4Q9UM07 663 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 FAM50BQ9Y247 325 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 IGSF9BQ9UPX0 1349 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 KDM6AO15550 1401 aaPredicted RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 RAPGEF6Q8TEU7 1601 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 H3BMM5 538 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 MYO1CO00159 1063 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 CBX4O00257 560 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 CST8O60676 142 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 RHOBTB3O94955 611 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 THP07101 528 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 CHI3L1P36222 383 aaPredicted RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 HALP42357 657 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 NECTIN1Q15223 517 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 ALX1Q15699 326 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 SLC45A4Q5BKX6 768 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 NFRKBQ6P4R8 1299 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 FOXR1Q6PIV2 292 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 CLEC10AQ8IUN9 316 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 CCDC60Q8IWA6 550 aaPredicted RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 KIAA2013Q8IYS2 634 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 MCOLN3Q8TDD5 553 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 VPS33AQ96AX1 596 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 GRAMD1AQ96CP6 724 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 RIT2Q99578 217 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 ARMC7Q9H6L4 198 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 IL1RL2Q9HB29 575 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 ADARB2Q9NS39 739 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.47□□□□□ -1.21
UPF2-203ENST00000397053 XPO7Q9UIA9 1087 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 GSG1L2A8MUP6 293 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 NFIBO00712 420 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 NCK2O43639 380 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 GARTP22102 1010 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 STIP1P31948 543 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 RPS6P62753 249 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 ZNF200P98182 395 aaPredicted RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 CNGA3Q16281 694 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 AMHR2Q16671 573 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 EPHA10Q5JZY3 1008 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 LAYNQ6UX15 382 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 MACC1Q6ZN28 852 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 DEFB132Q7Z7B7 95 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 CDK20Q8IZL9 346 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 RNASE11Q8TAA1 199 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 OSBPL9Q96SU4 736 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 KCNK16Q96T55 309 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 TSC22D3Q99576 134 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 ZCCHC2Q9C0B9 1178 aaKnown RBP7.47□□□□□ -1.21
UPF2-203ENST00000397053 ATXN3LQ9H3M9 355 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 GOLPH3Q9H4A6 298 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 MROH8Q9H579 483 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 RERGLQ9H628 205 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 PARVBQ9HBI1 364 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 RGS18Q9NS28 235 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 KCND2Q9NZV8 630 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 CHMP2BQ9UQN3 213 aa7.47□□□□□ -1.21
UPF2-203ENST00000397053 E2F8A0AVK6 867 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 CCDC85CA6NKD9 419 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 OPLAHO14841 1288 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 TBX3O15119 743 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 FOXP2O15409 715 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 SUPT7LO94864 414 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 PYGMP11217 842 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 AKAP5P24588 427 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 RRM2P31350 389 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 FNTAP49354 379 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 PPP2R2AP63151 447 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 ALKBH2Q6NS38 261 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 FAM9CQ8IZT9 166 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 KCTD17Q8N5Z5 321 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 TNIP2Q8NFZ5 429 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 RIN3Q8TB24 985 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 C9orf72Q96LT7 481 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 C1QTNF7Q9BXJ2 289 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 TAF1DQ9H5J8 278 aaPredicted RBP7.46□□□□□ -1.21
UPF2-203ENST00000397053 V9GYQ6 96 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 NLRP1Q9C000 1473 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 E9PBE3 544 aa7.46□□□□□ -1.21
UPF2-203ENST00000397053 M0R3G1 203 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms