RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 UTP6Q9NYH9 597 aaKnown RBP3.55□□□□□ -1.84
VPS13C-203ENST00000395896 GIT1Q9Y2X7 761 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 PCDHA3Q9Y5H8 950 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 ASTN1O14525 1302 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 APOL1O14791 398 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 HDAC4P56524 1084 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 PTP4A2Q12974 167 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 BAP1Q92560 729 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 CAVIN3Q969G5 261 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 C18orf25Q96B23 403 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-203ENST00000395896 SMARCD1Q96GM5 515 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 CEP295NLQ96MC4 621 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 NDE1Q9NXR1 346 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 TLK1Q9UKI8 766 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 USP18Q9UMW8 372 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 PLXNA1Q9UIW2 1896 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 KIF13BQ9NQT8 1826 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 DDX60LQ5H9U9 1706 aaKnown RBP3.55□□□□□ -1.84
VPS13C-203ENST00000395896 EOMESO95936 686 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 PMS1P54277 932 aaKnown RBP3.55□□□□□ -1.84
VPS13C-203ENST00000395896 ITGB3BPQ13352 177 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-203ENST00000395896 BTBD8Q5XKL5 378 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 KAZNQ674X7 775 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 OLFML2BQ68BL8 750 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 NUGGCQ68CJ6 796 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 PHF13Q86YI8 300 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-203ENST00000395896 KATNAL2Q8IYT4 538 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 SERPINB12Q96P63 405 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 AMACRQ9UHK6 382 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 FARP1Q9Y4F1 1045 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-203ENST00000395896 SF3B1O75533 1304 aaKnown RBP eCLIP3.55□□□□□ -1.848e-6■■■■■ 107
VPS13C-203ENST00000395896 C3orf70A6NLC5 250 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-203ENST00000395896 RTN3O95197 1032 aaPredicted RBP3.55□□□□□ -1.84
VPS13C-203ENST00000395896 GLRA2P23416 452 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 FDFT1P37268 417 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 GRM5P41594 1212 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 IL17AQ16552 155 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 MAP7D1Q3KQU3 841 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 KCNK18Q7Z418 384 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 MAML3Q96JK9 1138 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 CACNA1EQ15878 2313 aa3.55□□□□□ -1.84
VPS13C-203ENST00000395896 SIGLEC16A6NMB1 481 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 STAU1O95793 577 aaKnown RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 DARSP14868 501 aaKnown RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 KRT17Q04695 432 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 GEN1Q17RS7 908 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 CCDC126Q96EE4 140 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 RAB3IPQ96QF0 476 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 RBM15Q96T37 977 aaKnown RBP eCLIP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 PCYOX1Q9UHG3 505 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 PCDHGC3Q9UN70 934 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 CNTNAP1P78357 1384 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 A0A087WZ62 844 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 APRTP07741 180 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 MYL3P08590 195 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 ALDH1A3P47895 512 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 CLCN3P51790 818 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 AMPD2Q01433 879 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 DNAJC3Q13217 504 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 DEFB115Q30KQ5 88 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 STRADAQ7RTN6 431 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 WNK4Q96J92 1243 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 FDXACB1Q9BRP7 624 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 VCXQ9H320 206 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 FGFR1OP2Q9NVK5 253 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 CAPN6Q9Y6Q1 641 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 COL11A1P12107 1806 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 CASP8AP2Q9UKL3 1982 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 COMTP21964 271 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 TGM2P21980 687 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 RECQLP46063 649 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 NAA20P61599 178 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 MAP1SQ66K74 1059 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 WDR59Q6PJI9 974 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 MMS22LQ6ZRQ5 1243 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 RFX6Q8HWS3 928 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 RAB3IL1Q8TBN0 382 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 ARHGEF2Q92974 986 aaKnown RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 SERPINB11Q96P15 392 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 GPR20Q99678 358 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 ACO2Q99798 780 aaKnown RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 SH2D3AQ9BRG2 576 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 TSPYL2Q9H2G4 693 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 PCDH9Q9HC56 1237 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 AAR2Q9Y312 384 aaKnown RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 PTCH2Q9Y6C5 1203 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 ATG2BQ96BY7 2078 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 RASA4BC9J798 803 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 RASA4O43374 803 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 MTA2O94776 668 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 POLBP06746 335 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 RRM1P23921 792 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 MAP2K2P36507 400 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 SERPINB9P50453 376 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 PAPOLAP51003 745 aaKnown RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 CCDC6Q16204 474 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 IFNLR1Q8IU57 520 aaPredicted RBP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 PDZD8Q8NEN9 1154 aa3.54□□□□□ -1.84
VPS13C-203ENST00000395896 FUBP3Q96I24 572 aaKnown RBP eCLIP3.54□□□□□ -1.84
VPS13C-203ENST00000395896 ATP6V1G3Q96LB4 118 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms