RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 STX18Q9P2W9 335 aaKnown RBP11.72□□□□□ -0.53
CUX1-204ENST00000393824 MAFBQ9Y5Q3 323 aaPredicted RBP11.72□□□□□ -0.53
CUX1-204ENST00000393824 WDR81Q562E7 1941 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 MGAMO43451 1857 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 GPR25O00155 361 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 EDF1O60869 148 aaKnown RBP11.72□□□□□ -0.53
CUX1-204ENST00000393824 ZNF286BP0CG31 522 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 TNFAIP3P21580 790 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 SERPINB4P48594 390 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 SH3BGRP55822 239 aaPredicted RBP11.72□□□□□ -0.53
CUX1-204ENST00000393824 DBN1Q16643 649 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 SEL1L2Q5TEA6 688 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 GJB7Q6PEY0 223 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 SLC13A5Q86YT5 568 aaPredicted RBP11.72□□□□□ -0.53
CUX1-204ENST00000393824 C4orf19Q8IY42 314 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 SRRM1Q8IYB3 904 aaKnown RBP11.72□□□□□ -0.53
CUX1-204ENST00000393824 PPFIBP2Q8ND30 876 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 DENND1AQ8TEH3 1009 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 SOCS4Q8WXH5 440 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 NACC1Q96RE7 527 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 SLX1AQ9BQ83 275 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 ZHX3Q9H4I2 956 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.72□□□□□ -0.538e-7■■■■■ 154.8
CUX1-204ENST00000393824 TCEAL9Q9UHQ7 104 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 UBE4BO95155 1302 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 C2CD2LO14523 706 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 OATP04181 439 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 PSAPP07602 524 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 CDR2Q01850 454 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 DNAJC3Q13217 504 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 KIF22Q14807 665 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 RCN1Q15293 331 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 KYNUQ16719 465 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 CTC1Q2NKJ3 1217 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 CNPY1Q3B7I2 92 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 DSTYKQ6XUX3 929 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 ZC3H18Q86VM9 953 aaKnown RBP11.71□□□□□ -0.53
CUX1-204ENST00000393824 TRIM42Q8IWZ5 723 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 ZNF398Q8TD17 642 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 MIPEPQ99797 713 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 SPATA16Q9BXB7 569 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 CFHR5Q9BXR6 569 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 CADM1Q9BY67 442 aaKnown RBP11.71□□□□□ -0.53
CUX1-204ENST00000393824 MMADHCQ9H3L0 296 aaPredicted RBP11.71□□□□□ -0.53
CUX1-204ENST00000393824 RMI1Q9H9A7 625 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 UBN1Q9NPG3 1134 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 CYLDQ9NQC7 956 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 ZNF212Q9UDV6 495 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 DNAJC12Q9UKB3 198 aa11.71□□□□□ -0.53
CUX1-204ENST00000393824 CCDC22O60826 627 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 TBX10O75333 385 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 LYPLA2O95372 231 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 MARCKSL1P49006 195 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 CAV1Q03135 178 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 MCL1Q07820 350 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 KCNA1Q09470 495 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 STAT4Q14765 748 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 MYBPC3Q14896 1274 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 DRAP1Q14919 205 aaPredicted RBP11.71□□□□□ -0.54
CUX1-204ENST00000393824 DUSP28Q4G0W2 176 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 ACSBG2Q5FVE4 666 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 RFWD3Q6PCD5 774 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 PADI6Q6TGC4 694 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 LCA5Q86VQ0 697 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 FAM186BQ8IYM0 893 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 RIBC1Q8N443 379 aaPredicted RBP11.71□□□□□ -0.54
CUX1-204ENST00000393824 SEPT1Q8WYJ6 367 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 MAML1Q92585 1016 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 TSPAN18Q96SJ8 248 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 MPHOSPH6Q99547 160 aaKnown RBP11.71□□□□□ -0.54
CUX1-204ENST00000393824 ZNF184Q99676 751 aaPredicted RBP11.71□□□□□ -0.54
CUX1-204ENST00000393824 TUBB6Q9BUF5 446 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 WNT8AQ9H1J5 351 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 RNPEPQ9H4A4 650 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 ZNF302Q9NR11 478 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 GNEQ9Y223 722 aaKnown RBP11.71□□□□□ -0.54
CUX1-204ENST00000393824 TBC1D30Q9Y2I9 924 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 PTPN22Q9Y2R2 807 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 COMMD3-BMI1R4GMX3 469 aa11.71□□□□□ -0.54
CUX1-204ENST00000393824 THSD7BQ9C0I4 1608 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 CAPN9O14815 690 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 TBCAO75347 108 aaKnown RBP11.7□□□□□ -0.54
CUX1-204ENST00000393824 MTA2O94776 668 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 ZWINTO95229 277 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 PSMG1O95456 288 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 PYGMP11217 842 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 IVDP26440 423 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 CHKAP35790 457 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 KCNJ1P48048 391 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 FMO5P49326 533 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 CASP4P49662 377 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 SESN3P58005 492 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 NR1H3Q13133 447 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 LSAMPQ13449 338 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 PDK4Q16654 411 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 TAF1BQ53T94 588 aaPredicted RBP11.7□□□□□ -0.54
CUX1-204ENST00000393824 ACBD5Q5T8D3 534 aaPredicted RBP11.7□□□□□ -0.54
CUX1-204ENST00000393824 RASIP1Q5U651 963 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 RINLQ6ZS11 566 aa11.7□□□□□ -0.54
CUX1-204ENST00000393824 RELL1Q8IUW5 271 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms