RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 MRPL47Q9HD33 250 aaKnown RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 CYLDQ9NQC7 956 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 LNPEPQ9UIQ6 1025 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 C2CD2Q9Y426 696 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 RBBP6Q7Z6E9 1792 aaKnown RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 ABLIM1O14639 778 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 HNRNPDLO14979 420 aaKnown RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 NPTXRO95502 500 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 SKIP12755 728 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 SOX10P56693 466 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 GEMIN4P57678 1058 aaKnown RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 GCNT1Q02742 428 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 CYP24A1Q07973 514 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 DMP1Q13316 513 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 TFDP1Q14186 410 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 LBRQ14739 615 aaKnown RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 TMEM132BQ14DG7 1078 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 CTC1Q2NKJ3 1217 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 ACSBG2Q5FVE4 666 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 RFX8Q6ZV50 586 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 GTF3C2Q8WUA4 911 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 BICD1Q96G01 975 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 TMEM121Q9BTD3 319 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 TRIM55Q9BYV6 548 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 FBXO6Q9NRD1 293 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 RNF146Q9NTX7 359 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 SLC24A2Q9UI40 661 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 SCOCQ9UIL1 159 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 SLC45A1Q9Y2W3 748 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 NFIBO00712 420 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 ATP9AO75110 1047 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 TJP3O95049 919 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 SERPINB3P29508 390 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 NPTX2P47972 431 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 ERFP50548 548 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 NCKAP1LP55160 1127 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 SNRPFP62306 86 aaKnown RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 MORF4L2Q15014 288 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 CMPK2Q5EBM0 449 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 WDR44Q5JSH3 913 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 IRGCQ6NXR0 463 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 ENOSF1Q7L5Y1 443 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 LRRC6Q86X45 466 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 TMEM161BQ8NDZ6 487 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 CHST13Q8NET6 341 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 SH3TC2Q8TF17 1288 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 TMEM174Q8WUU8 243 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 PRR11Q96HE9 360 aaPredicted RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 WNK4Q96J92 1243 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 TLE6Q9H808 572 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 KMT5AQ9NQR1 393 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 KANSL3Q9P2N6 904 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 SLC17A7Q9P2U7 560 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 RPL26L1Q9UNX3 145 aaKnown RBP11.65□□□□□ -0.54
CCDC40-203ENST00000374877 LRCH1Q9Y2L9 728 aa11.65□□□□□ -0.54
CCDC40-203ENST00000374877 ALOX15BO15296 676 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 HNRNPCL1O60812 293 aaKnown RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 OSBPP22059 807 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 GJA5P36382 358 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 ARFIP2P53365 341 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 GAD2Q05329 585 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 HIF1AQ16665 826 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 SGSM1Q2NKQ1 1148 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 SNRNP48Q6IEG0 339 aaKnown RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 NLRX1Q86UT6 975 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 ALLCQ8N6M5 410 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 TMC2Q8TDI7 906 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 SYTL5Q8TDW5 730 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 PYROXD1Q8WU10 500 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 SPIRE2Q8WWL2 714 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 MANSC1Q9H8J5 431 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 GSC2O15499 205 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 TNNI1P19237 187 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 POLE2P56282 527 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 BPIFB4P59827 614 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 RPL7AP62424 266 aaKnown RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 BRDTQ58F21 947 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 TMEM270Q6UE05 265 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 MAP4K3Q8IVH8 894 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 PPFIBP2Q8ND30 876 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 NRG4Q8WWG1 115 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 NSL1Q96IY1 281 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 PAFAH2Q99487 392 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 TSSK1BQ9BXA7 367 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 ST6GALNAC4Q9H4F1 302 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 ZNF408Q9H9D4 720 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 C2orf71A6NGG8 1288 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 CELF2O95319 508 aaKnown RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 ITGBL1O95965 494 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 CYP1A1P04798 512 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 ESRRAP11474 423 aaPredicted RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 PSMC4P43686 418 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 GPX6P59796 221 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 DYNLT1P63172 113 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 ZRSR2Q15696 482 aaKnown RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 RNASEH2BQ5TBB1 312 aaKnown RBP11.64□□□□□ -0.55
CCDC40-203ENST00000374877 GPAT2Q6NUI2 795 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 XRRA1Q6P2D8 792 aa11.64□□□□□ -0.55
CCDC40-203ENST00000374877 CCDC62Q6P9F0 684 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms