RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 FMR1Q06787 632 aaKnown RBP eCLIP11.99□□□□□ -0.495e-8■■■□□ 18.8
VCL-202ENST00000372755 HHIPL2Q6UWX4 724 aa11.99□□□□□ -0.49
VCL-202ENST00000372755 USP38Q8NB14 1042 aa11.99□□□□□ -0.49
VCL-202ENST00000372755 LRG1P02750 347 aa11.99□□□□□ -0.49
VCL-202ENST00000372755 COILP38432 576 aaPredicted RBP11.99□□□□□ -0.49
VCL-202ENST00000372755 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.99□□□□□ -0.494e-7■■■■□ 20.3
VCL-202ENST00000372755 CDH18Q13634 790 aa11.99□□□□□ -0.49
VCL-202ENST00000372755 FAM71DQ8N9W8 422 aa11.99□□□□□ -0.49
VCL-202ENST00000372755 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.99□□□□□ -0.491e-8■■■■□ 20.2
VCL-202ENST00000372755 CNOT7Q9UIV1 285 aaKnown RBP11.99□□□□□ -0.49
VCL-202ENST00000372755 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 DGKIO75912 1065 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 NPTXRO95502 500 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 STIP1P31948 543 aaKnown RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 ATXN3P54252 364 aaPredicted RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 TRIM28Q13263 835 aaKnown RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 ZNF177Q13360 481 aaPredicted RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 TRIM71Q2Q1W2 868 aaKnown RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 AGPAT5Q9NUQ2 364 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 ZNF70Q9UC06 446 aaPredicted RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 PRG3Q9Y2Y8 225 aaPredicted RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 E2F8A0AVK6 867 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 PSTPIP1O43586 416 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 GAS2O43903 313 aaKnown RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 PLA2G4FQ68DD2 849 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 TTC33Q6PID6 262 aaPredicted RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 C16orf86Q6ZW13 317 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 C11orf96Q7Z7L8 435 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 PDLIM2Q96JY6 352 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 SERPINB12Q96P63 405 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 BBS2Q9BXC9 721 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 ILKAPQ9H0C8 392 aaPredicted RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 UBQLN1Q9UMX0 589 aaKnown RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 ALG6Q9Y672 507 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 H7C4K7 107 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 RRM2P31350 389 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 TSEN34Q9BSV6 310 aaKnown RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 ARHGEF40Q8TER5 1519 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 NFIBO00712 420 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 GLRA3O75311 464 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 FNTAP49354 379 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 TMEM62Q0P6H9 643 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 LAMC2Q13753 1193 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 TMEM132BQ14DG7 1078 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 POLD3Q15054 466 aaPredicted RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 KLHDC7AQ5VTJ3 777 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 SRLQ86TD4 932 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 C10orf53Q8N6V4 93 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 COLEC11Q9BWP8 271 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 ZCWPW1Q9H0M4 648 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 DCDC2Q9UHG0 476 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 HACL1Q9UJ83 578 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 C4BPBP20851 252 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 SOX11P35716 441 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 LAYNQ6UX15 382 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 UNC45BQ8IWX7 931 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 MMGT1Q8N4V1 131 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 RSPH1Q8WYR4 309 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 SH3GL2Q99962 352 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 C10orf88Q9H8K7 445 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 DMAP1Q9NPF5 467 aaPredicted RBP11.98□□□□□ -0.49
VCL-202ENST00000372755 HPS4Q9NQG7 708 aa11.98□□□□□ -0.49
VCL-202ENST00000372755 PBRM1Q86U86 1689 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 CCT8L1PA6NM43 557 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 MROH9Q5TGP6 573 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 C17orf75Q9HAS0 396 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 RNF112Q9ULX5 631 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 AAR2Q9Y312 384 aaKnown RBP11.97□□□□□ -0.49
VCL-202ENST00000372755 SHROOM2Q13796 1616 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.97□□□□□ -0.492e-6■■■■□ 23.9
VCL-202ENST00000372755 XPO1O14980 1071 aaKnown RBP11.97□□□□□ -0.49
VCL-202ENST00000372755 FXR2P51116 673 aaKnown RBP eCLIP11.97□□□□□ -0.491e-7■■■■□ 19.6
VCL-202ENST00000372755 ZNF157P51786 506 aaPredicted RBP11.97□□□□□ -0.49
VCL-202ENST00000372755 SLC16A1P53985 500 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 STK4Q13043 487 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 C16orf72Q14CZ0 275 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 ZC2HC1CQ53FD0 456 aaPredicted RBP11.97□□□□□ -0.49
VCL-202ENST00000372755 TRAF7Q6Q0C0 670 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 GPRC5AQ8NFJ5 357 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 KLF6Q99612 283 aaPredicted RBP11.97□□□□□ -0.49
VCL-202ENST00000372755 THUMPD3Q9BV44 507 aaKnown RBP11.97□□□□□ -0.49
VCL-202ENST00000372755 MAN1C1Q9NR34 630 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 KRT75O95678 551 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 RPA1P27694 616 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 CLEC16AQ2KHT3 1053 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 SMTNL2Q2TAL5 461 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 SLC30A9Q6PML9 568 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 CLEC17AQ6ZS10 378 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 OR2W6PQ8NHA6 318 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 MAP3K14Q99558 947 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 PAIP2BQ9ULR5 123 aaKnown RBP11.97□□□□□ -0.49
VCL-202ENST00000372755 VPS26AO75436 327 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 EGFRP00533 1210 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 STAG3L1P0CL83 205 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 CETPP11597 493 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 DARSP14868 501 aaKnown RBP11.97□□□□□ -0.49
VCL-202ENST00000372755 CYP2B6P20813 491 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 BRD2P25440 801 aaKnown RBP11.97□□□□□ -0.49
VCL-202ENST00000372755 LSP1P33241 339 aa11.97□□□□□ -0.49
VCL-202ENST00000372755 VHLP40337 213 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms