RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 CARSP49589 748 aaKnown RBP16.21■□□□□ 0.19
PTPRF-201ENST00000359947 SH3BGRP55822 239 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-201ENST00000359947 POU4F1Q01851 419 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 KCTD17Q8N5Z5 321 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 FEZF2Q8TBJ5 459 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 ZNF669Q96BR6 464 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-201ENST00000359947 TSEN34Q9BSV6 310 aaKnown RBP16.21■□□□□ 0.19
PTPRF-201ENST00000359947 CNTNAP2Q9UHC6 1331 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 FGFR1P11362 822 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 CUL2Q13617 745 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 RABGAP1LQ5R372 815 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 ZDHHC15Q96MV8 337 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 EGFRP00533 1210 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 HIST2H2ACQ16777 129 aaPredicted RBP16.21■□□□□ 0.19
PTPRF-201ENST00000359947 HIST2H2AA3Q6FI13 130 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 ICA1LQ8NDH6 482 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 FAM162AQ96A26 154 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 OSBPL8Q9BZF1 889 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 KCNJ1P48048 391 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 MROH9Q5TGP6 573 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 ADSSL1Q8N142 457 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 H3BRB1 525 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 KDM1AO60341 852 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 ZBTB17Q13105 803 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 LAYNQ6UX15 382 aa16.21■□□□□ 0.19
PTPRF-201ENST00000359947 TUT1Q9H6E5 874 aaKnown RBP16.21■□□□□ 0.19
PTPRF-201ENST00000359947 EIF3DO15371 548 aaKnown RBP eCLIP16.21■□□□□ 0.18
PTPRF-201ENST00000359947 ALOX15P16050 662 aaPredicted RBP16.21■□□□□ 0.18
PTPRF-201ENST00000359947 HERVK_113P62684 666 aa16.21■□□□□ 0.18
PTPRF-201ENST00000359947 UGP2Q16851 508 aa16.21■□□□□ 0.18
PTPRF-201ENST00000359947 MYCBPQ99417 103 aaPredicted RBP16.21■□□□□ 0.18
PTPRF-201ENST00000359947 IRX2Q9BZI1 471 aaPredicted RBP16.21■□□□□ 0.18
PTPRF-201ENST00000359947 ACTR5Q9H9F9 607 aaPredicted RBP16.21■□□□□ 0.18
PTPRF-201ENST00000359947 PHF2O75151 1096 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 SRP72O76094 671 aaKnown RBP16.2■□□□□ 0.18
PTPRF-201ENST00000359947 ADORA2AP29274 412 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 ANTXR2P58335 489 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 AP2B1P63010 937 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 PTK7Q13308 1070 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 PHF21AQ96BD5 680 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 RSAD1Q9HA92 442 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 ERVK-10P10266 1014 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 XRRA1Q6P2D8 792 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 SPATA4Q8NEY3 305 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 ELMO3Q96BJ8 720 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 RNF19AQ9NV58 838 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 MAPRE2Q15555 327 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 TEDDM1Q5T9Z0 273 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 FAM171A1Q5VUB5 890 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 MPZL3Q6UWV2 235 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 TRPM1Q7Z4N2 1603 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 BEX3Q00994 111 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 TRMT6Q9UJA5 497 aaKnown RBP16.2■□□□□ 0.18
PTPRF-201ENST00000359947 GMNCA6NCL1 334 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 UBXN8O00124 270 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 CLASP2O75122 1294 aaKnown RBP16.2■□□□□ 0.18
PTPRF-201ENST00000359947 H2AFYO75367 372 aaKnown RBP16.2■□□□□ 0.18
PTPRF-201ENST00000359947 IMPDH2P12268 514 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 ABCE1P61221 599 aaKnown RBP16.2■□□□□ 0.18
PTPRF-201ENST00000359947 CYFIP2Q96F07 1278 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 ATXN3LQ9H3M9 355 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 FBXO10Q9UK96 956 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 RHOBTB3O94955 611 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 GUCA1CO95843 209 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 SLC2A3P11169 496 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 CALML6Q8TD86 181 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 GPATCH2LQ9NWQ4 482 aa16.2■□□□□ 0.18
PTPRF-201ENST00000359947 OXCT1P55809 520 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 TXNRD3Q86VQ6 643 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 CBWD2Q8IUF1 395 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 PLEKHA8Q96JA3 519 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 MTG1Q9BT17 334 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-201ENST00000359947 PDGFDQ9GZP0 370 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-201ENST00000359947 ZNF556Q9HAH1 456 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 H2AFY2Q9P0M6 372 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-201ENST00000359947 MYO3AQ8NEV4 1616 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 SRGNP10124 158 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 CAMK2GQ13555 558 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-201ENST00000359947 ETNK1Q9HBU6 452 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 HMX1Q9NP08 348 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-201ENST00000359947 RBP3P10745 1247 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 AGPAT3Q9NRZ7 376 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 MTFR1Q15390 333 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 GRIK4Q16099 956 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 LRRC36Q1X8D7 754 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 CDCA5Q96FF9 252 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 PAK5Q9P286 719 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 OGTO15294 1046 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 MED24O75448 989 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 STX3Q13277 289 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 TP53BP2Q13625 1128 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 EDEM1Q92611 657 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 KRT35Q92764 455 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 TRIM16O95361 564 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 RHOCP08134 193 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 MLNP12872 115 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 TRADDQ15628 312 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 C16orf87Q6PH81 154 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 FAM180AQ6UWF9 173 aa16.19■□□□□ 0.18
PTPRF-201ENST00000359947 MIER2Q8N344 545 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms