RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 SNUPNO95149 360 aaKnown RBP13.78□□□□□ -0.2
COL18A1-201ENST00000342220 KCNJ1P48048 391 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 MTM1Q13496 603 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 WLSQ5T9L3 541 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 DENND1BQ6P3S1 775 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 DNAJC24Q6P3W2 148 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 RASGEF1CQ8N431 466 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 CCDC33Q8N5R6 958 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 OLIG1Q8TAK6 271 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 UHMK1Q8TAS1 419 aaKnown RBP13.78□□□□□ -0.2
COL18A1-201ENST00000342220 MYCBPAPQ8TBZ2 947 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 MED10Q9BTT4 135 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 NOCTQ9UK39 431 aaKnown RBP13.78□□□□□ -0.2
COL18A1-201ENST00000342220 PRRC2BQ5JSZ5 2229 aaKnown RBP13.78□□□□□ -0.2
COL18A1-201ENST00000342220 BHMG1C9JSJ3 638 aaPredicted RBP13.78□□□□□ -0.2
COL18A1-201ENST00000342220 MCF2P10911 925 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 TBXAS1P24557 533 aaPredicted RBP13.78□□□□□ -0.2
COL18A1-201ENST00000342220 TM4SF4P48230 202 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 BPIFB4P59827 614 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 RBP5P82980 135 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 GCNT1Q02742 428 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 ITGA7Q13683 1181 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 LRIG3Q6UXM1 1119 aa13.78□□□□□ -0.2
COL18A1-201ENST00000342220 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.78□□□□□ -0.23e-6■■■■■ 50.8
COL18A1-201ENST00000342220 DNAJC17Q9NVM6 304 aaKnown RBP13.78□□□□□ -0.2
COL18A1-201ENST00000342220 A0A0G2JMZ2 1700 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 A0A0A6YYK5 440 aaPredicted RBP13.77□□□□□ -0.2
COL18A1-201ENST00000342220 CCDC188H7C350 402 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 MEFVO15553 781 aaPredicted RBP13.77□□□□□ -0.2
COL18A1-201ENST00000342220 FSBPO95073 299 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 CCL23P55773 120 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 MTFR1Q15390 333 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 SNCBQ16143 134 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 DEFB128Q7Z7B8 93 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 SYCE1Q8N0S2 351 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 BEST2Q8NFU1 509 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 SPDYE1Q8NFV5 336 aaPredicted RBP13.77□□□□□ -0.2
COL18A1-201ENST00000342220 HES6Q96HZ4 224 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 CCDC114Q96M63 670 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 FAM210AQ96ND0 272 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 ADAM2Q99965 735 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 TRIM51Q9BSJ1 452 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 LRRC4CQ9HCJ2 640 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 SRRDQ9UH36 339 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 IPPQ9Y573 584 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 PTCH2Q9Y6C5 1203 aa13.77□□□□□ -0.2
COL18A1-201ENST00000342220 RBM47A0AV96 593 aaKnown RBP13.77□□□□□ -0.21
COL18A1-201ENST00000342220 TMEM253P0C7T8 217 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 APLP1P51693 650 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 RNASELQ05823 741 aaKnown RBP13.77□□□□□ -0.21
COL18A1-201ENST00000342220 SURF1Q15526 300 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 CCDC25Q86WR0 208 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 EIF1ADQ8N9N8 165 aaKnown RBP13.77□□□□□ -0.21
COL18A1-201ENST00000342220 MRPL45Q9BRJ2 306 aaKnown RBP13.77□□□□□ -0.21
COL18A1-201ENST00000342220 SDCBP2Q9H190 292 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 COQ4Q9Y3A0 265 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 TRIP12Q14669 1992 aaPredicted RBP13.77□□□□□ -0.21
COL18A1-201ENST00000342220 KIAA0391O15091 583 aaKnown RBP13.77□□□□□ -0.21
COL18A1-201ENST00000342220 GPR32O75388 356 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 B3GAT3O94766 335 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 CYBAP13498 195 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 P4HA1P13674 534 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 LCP1P13796 627 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 DSTYKQ6XUX3 929 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 FAM228AQ86W67 206 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 C1orf54Q8WWF1 131 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 SENP6Q9GZR1 1112 aaPredicted RBP13.77□□□□□ -0.21
COL18A1-201ENST00000342220 SNX25Q9H3E2 840 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 HMX1Q9NP08 348 aaPredicted RBP13.77□□□□□ -0.21
COL18A1-201ENST00000342220 STYXL1Q9Y6J8 313 aa13.77□□□□□ -0.21
COL18A1-201ENST00000342220 ANXA13P27216 316 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 DCAF12L1Q5VU92 463 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 ACAD10Q6JQN1 1059 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 ARRDC4Q8NCT1 418 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 NDRG1Q92597 394 aaKnown RBP13.76□□□□□ -0.21
COL18A1-201ENST00000342220 ADAMTS10Q9H324 1103 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 DPEP3Q9H4B8 488 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 INTUQ9ULD6 942 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 G3BP2Q9UN86 482 aaKnown RBP13.76□□□□□ -0.21
COL18A1-201ENST00000342220 SMIM35A0A1B0GVV1 85 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 DCDC2CA8MYV0 355 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 ATP2C2O75185 946 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 PIGRP01833 764 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 CCDC130P13994 396 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 RFX1P22670 979 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 GRK4P32298 578 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 DHX9Q08211 1270 aaKnown RBP13.76□□□□□ -0.21
COL18A1-201ENST00000342220 CLEC16AQ2KHT3 1053 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 UBL4BQ8N7F7 174 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 TMEM35BQ8NCS4 154 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 ATG4AQ8WYN0 398 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 ALG3Q92685 438 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 PAAF1Q9BRP4 392 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 SLITRK6Q9H5Y7 841 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 PTPRHQ9HD43 1115 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 NGRNQ9NPE2 291 aaKnown RBP13.76□□□□□ -0.21
COL18A1-201ENST00000342220 PADI3Q9ULW8 664 aa13.76□□□□□ -0.21
COL18A1-201ENST00000342220 SMIM28A0A1B0GU29 152 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 CTNNA2P26232 953 aa13.75□□□□□ -0.21
COL18A1-201ENST00000342220 PBX3P40426 434 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms